Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01129 ATGAAGACACTGTTGAACCCTAATTTTCTCTGGGGTTTCAAAATCAAACCCCTTTTCGCAGATTACAAAAGCGCACATTTTCATACCAAAACCCATTTCTTTCAAGACCTCCGAAATTGCAGCGATTTGATTTCTGCGATTTCTACTCACTCCAAGATTATAAAATCCGGATTTTTAAATGATAGATTGACTATCAACCATCTCATCAATTGCTATGTCAGGCTACGCAGAATTAAAAGAGCACATCAGCTGCTCGACGAAATGGCTCAACCAAATGTGGTGTCATGGACTTCAGTTATGGCAGGTTATAACGAGAAAGGCCAGCCAGAAACTTCCCTTTGGCTCTTTAACGAAATGGCCAAGTGTTCGGTTTCACCAAATGACTTCACATTTGCTACTGTTATTAATGCTTGTTCCACTCTTGCGAACTCGAAAAATGGTCGACAAATCCATTGCCAGATTGAGATTTTTGGTTTTGGAGATAATCTTGTTGTGTCTTCTTCACTCATTGATATGTATGGAAAATGCAACGATGTAAATGCAGCTCGGCTTGTTTTTGACGCAATGCCCTGTAAGAATGTTATTTCTTGGACTTCAATGATTTCTGCATATACACAGGATGGACAAGGCTACCTTGCTCTCCAACTTTTCCGAGAATTCATTTATGCAACGCTAGACTCTCCCAATCATTTCATGTTGGCTAGTGTGATATGTGCTTGCGCAAGCCTAGGGATGTTATCTGCCGGGAAAGCTGCACATGGAGCTGTAATTCGTCATAGCCATGATTCAAACGATGTAGTAGCAAGTGCTTTGGTTGACATGTATGCAAAATGTGGGTGCATATATTATTCTGATAAACTGTTTAGGCGAATTATAAACCCTTCCGTGATCCCTTTCTCTTCGATTATTGTTAGTGCGGCAAAGTATGGACTTGGGAGAGTTGCCCTTGAACTCTTTGATGAAATGATAGACAAAGGTCTTGAGCCTAACCATATTACCTTTGTCGGTGTCTTACATGCTTGCAGCCACTCAGGTCTGATAAGTGAAGGCCTTCAACACTTCACATCAATGTTTAAGAAACACGGATTAGTCCCTGAGATGAAGCATTACGTGTGTGTTGTCGACATGCTTGGTCGAATAGGCCGGATAGATGAGGCTTATAAGCTTGCATTATCGACAGTGCCGAATTCTGATGACAGGGCTTTGCTATGGGGGGCGCTTCTTTCCGCCAGTAGGCTTCATGGAAGGGTTGACATCGCAATCAAAGCTCATCGTCAGCTAGTCGAAGCCAAGCAACAGGTGGCCGGTGCATATGTTACATTGTCAAATGCTTACGCACTGGGAGGAGATTTGGAGACTGCAAATAGACTTCGAGTCGAAATGAAGAAAGCCGGAGTGCAGAAAGAACCAGGCAGTAGTTGGGTTGAGATAAAAGACTCGATCTATGTGTTTCATGCCGGAGATTTGTCGTCTTGTCTTCAAAGTGTTGAAATAGTGAAGCTTTTGGGGAAGTTGGAAGAGGAAATGAAGGAGAGAGGATATGTGAGATCAAGTGTTGGGATGGTGTATGTAGATGTGGAGGAAGAGGCTAAGGAGGTGATTATTGGTTTGCACAGTGAAAGACTGGCATTAGGATTTGGTTTGATAAATGCTCCAAAAGGATCTACAATCAGAATAATGAAGAATTTGAGAATGTGCTGGGACTGTCATCAGGCTTTCAAGTTGATCAGTGAGATTGTGGAGAGAGATTTTGTTGTTAGAGATTTGAATAGATTCCATCATTTTAAATATGGTTCTTGTACTTGCAAAGATTTTTGGTGA 1821 41.79 MKTLLNPNFLWGFKIKPLFADYKSAHFHTKTHFFQDLRNCSDLISAISTHSKIIKSGFLNDRLTINHLINCYVRLRRIKRAHQLLDEMAQPNVVSWTSVMAGYNEKGQPETSLWLFNEMAKCSVSPNDFTFATVINACSTLANSKNGRQIHCQIEIFGFGDNLVVSSSLIDMYGKCNDVNAARLVFDAMPCKNVISWTSMISAYTQDGQGYLALQLFREFIYATLDSPNHFMLASVICACASLGMLSAGKAAHGAVIRHSHDSNDVVASALVDMYAKCGCIYYSDKLFRRIINPSVIPFSSIIVSAAKYGLGRVALELFDEMIDKGLEPNHITFVGVLHACSHSGLISEGLQHFTSMFKKHGLVPEMKHYVCVVDMLGRIGRIDEAYKLALSTVPNSDDRALLWGALLSASRLHGRVDIAIKAHRQLVEAKQQVAGAYVTLSNAYALGGDLETANRLRVEMKKAGVQKEPGSSWVEIKDSIYVFHAGDLSSCLQSVEIVKLLGKLEEEMKERGYVRSSVGMVYVDVEEEAKEVIIGLHSERLALGFGLINAPKGSTIRIMKNLRMCWDCHQAFKLISEIVERDFVVRDLNRFHHFKYGSCTCKDFW 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9882151 9883971 + Bpe015809.1 Bpe04g01129 102938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01129 606 Pfam E motif 415 476 IPR046848 -
Bpe04g01129 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Bpe04g01129 606 Gene3D Tetratricopeptide repeat domain 213 338 IPR011990 GO:0005515
Bpe04g01129 606 Gene3D Tetratricopeptide repeat domain 20 154 IPR011990 GO:0005515
Bpe04g01129 606 PANTHER OS12G0163600 PROTEIN 30 585 - -
Bpe04g01129 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Bpe04g01129 606 Pfam Pentatricopeptide repeat domain 289 341 IPR002885 -
Bpe04g01129 606 Pfam PPR repeat 66 88 IPR002885 -
Bpe04g01129 606 Pfam PPR repeat 195 220 IPR002885 -
Bpe04g01129 606 Pfam PPR repeat 167 193 IPR002885 -
Bpe04g01129 606 Pfam DYW family of nucleic acid deaminases 517 606 IPR032867 GO:0008270
Bpe04g01129 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 585 - -
Bpe04g01129 606 Pfam PPR repeat family 91 138 IPR002885 -
Bpe04g01129 606 Gene3D Tetratricopeptide repeat domain 339 473 IPR011990 GO:0005515
Bpe04g01129 606 TIGRFAM PPR: pentatricopeptide repeat domain 64 88 IPR002885 -
Bpe04g01129 606 TIGRFAM PPR: pentatricopeptide repeat domain 94 127 IPR002885 -
Bpe04g01129 606 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
Bpe04g01129 606 SUPERFAMILY TPR-like 63 455 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01129 - - - qsu:112007717 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01129 Bpe-Chr4:9882151 Bpe13g01377 Bpe-Chr13:18999066 3.83E-37 dispersed
Bpe04g01129 Bpe-Chr4:9882151 Bpe02g00048 Bpe-Chr2:355666 7.56E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01129 Bpe_Chr04 FPKM 130.159256 139.179733 36.960026 36.479763 84.176788 79.327538 78.543694 51.37537 52.136173 49.464123