Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01130 ATGAATTTGGTTCAAGAAAATAATGACAATGGGGATTTCCACGAAGAAGCATCGCCGGAGCAATCAGTTTCTGCAGAAAATTCTGATACATGCGTTGCATTTGGAGACCCTGAGGTTTTGCCTCGAGTTGGTGAAGAATATCAAGTAGAGGTTCCGCCGCTCATGACAAAGTTAGATTATGTCTCAATTGCTAGCATCAAACACGACAGAGAAGTTCATAACGATTTTTGTATGGGACTAGCCATACCTGTAATGTGGATTAACAAGGAGGATGAGACAGTAAAACAGAAGTCTCGTAAACATGAGATCTTCACAGACGATGATTTGAGAGAAAATATTTCAGGCCATGATTTGACACAGAATGAGCTAGTTTTGGAACAAGAATTTGATGTTAAAATGTGTGGCAATATGGTTCCTGGCTCCTCTAGTGAATCGTGGAGTTACATGGAAGAAGAAAGCTTTATTCTCAGTTTGTATATCTTTAGAAAAAACCTTGTACAGGTGAAGAAGTTTATGGAGGCTGGAAAAATGGGGGATGTTCTTTCATTCTATTACGGCAAGTTTTATCGATCTGAAAAACATCGTAGATGGTCAGAATGTCGGAAAGTGAGAGGTAGAAGATGTGTATATGGACATAGATTATTTACGGGTTGGAGACAGAATGAATTGTTATCTCGCTTGTTTTCCCATGGATCGGAAGAAAGAAAAAGTGCATTGCTTGAGGTCTCAAAGACGTTTACTGAGGGTAAAATTCAATTCGAGGAATATGTATTTGCATTAAAGGCTATAGTTGGGTTGAAAGATCTGATAGATGCTGTGGGAATTGGAAAAGGGAAGCAAGATCTCTCAGGTTTTGCCATGGATCCATTGAAGTCCAGTCAGCCTGCTTCAATTCGACCGGAAATACCGAATGGGAAAGCATGTGCGGCGCTTACTCCATCAGAGATTGTTCAGTTTCTCACAGGTGACTTCAGGTTGAGCAAAGCACGAACGAGTGATCTCTTTTGGGAAGCTGTTTGGCCTCGTTTACTTGCTCGAGGGTGGCATTCTGAGCAGCCCACAAATCACGGTTTTGCCATTGGTACGAAGCAAACTCTCGTTTTTCTTATACCTGGAATTAAAAAGTTTTTGGGTGGAAAATTGGCGAAAGGAAATCACTATTTTGATTCTGTCAGTGATGTGTTGAGTAAAGTTGCTTCGAACCCATGGATGCTAGAGCTTGAGAATGGTTCAGTCAGGGCAGGAGAAAATGCTGAAGAAAACAGGTGGGCTCAAGAAATGAAGATGGACAAAGAGGATGTACTTAATCAGCACCGCCATTGTTATCTTCAACCCAGAACTCCAAATCATGATTCAGATGCCACCAAGTTTACAGTTGTTGACACCAGTCTTGCTTGTGGGAAAAGCTTCAAAATTAGAGAACTGAGAAGTTTACCGGCTGGAATTAATTCTAATGGCAAAAGCAGAAGTGACTTTGAAGATAGTAACTCGGTTTCTTCCGAGAATTCCATGGACAAGTTAAATTTTGACGAAAATAATGATAAAATCACGATCTCTTTGGATCGCAAAGATTTTTCAGGAGGTGGTTCCAAACAACGGCCTCAATCATCAAGCCGAAGAACTAGACCCGATGTGAAAAACAAAGTGAAAAAAAAACGCCGGCAAGGTTTGAATGTGTGTGATCAGTCAGAGACCAGTCAAAAATCAAAACAAGAGGAAGCTACTTGTTCTATTGATAGTTTTTATTACAGTGAAAATAGTCACTTCCTAGTTGATCAGCTTCAGGAGAAATCTTCGTCTAATTCTTCAAAAAGAGAACACGCACAAGATACGTCTCATCCCCTTGAATTGATTGATCTGAATGTGCCGATTCCTCTGGACGATGACATTGATGAGCTATCCTTGGTCAAAAATGGAAGTGGACATGGCCGAACCAGTCAGGTATTACTCTGTCCAAACGCGATTAAAACAACTCAAAATCAGCAAAATTTGAGGAGACAGAGTACTAGAAACCGGCCCCCCACTACGAGAGCACTCGAAGCTCTTGCCTTAGGATTTCTCGACGTAAAGCAGAAACGAAAGGCTAAGGACGCCTTTCAAGAAGAACACTTGATGCTCGGACCATCGCGCCGTGCTCGTGCTAAGGTTAGATCTTCAGAGAACTCGAGGAGTATTACTGAAGCTTCCAAAACAGAGGAAGCAGAAAACAGCAGAAGCAATAGTAATTGTGAGTCCACCTTTGCTGCGAAAGTTCAAAGCTTAGTGAATTAG 2271 41.35 MNLVQENNDNGDFHEEASPEQSVSAENSDTCVAFGDPEVLPRVGEEYQVEVPPLMTKLDYVSIASIKHDREVHNDFCMGLAIPVMWINKEDETVKQKSRKHEIFTDDDLRENISGHDLTQNELVLEQEFDVKMCGNMVPGSSSESWSYMEEESFILSLYIFRKNLVQVKKFMEAGKMGDVLSFYYGKFYRSEKHRRWSECRKVRGRRCVYGHRLFTGWRQNELLSRLFSHGSEERKSALLEVSKTFTEGKIQFEEYVFALKAIVGLKDLIDAVGIGKGKQDLSGFAMDPLKSSQPASIRPEIPNGKACAALTPSEIVQFLTGDFRLSKARTSDLFWEAVWPRLLARGWHSEQPTNHGFAIGTKQTLVFLIPGIKKFLGGKLAKGNHYFDSVSDVLSKVASNPWMLELENGSVRAGENAEENRWAQEMKMDKEDVLNQHRHCYLQPRTPNHDSDATKFTVVDTSLACGKSFKIRELRSLPAGINSNGKSRSDFEDSNSVSSENSMDKLNFDENNDKITISLDRKDFSGGGSKQRPQSSSRRTRPDVKNKVKKKRRQGLNVCDQSETSQKSKQEEATCSIDSFYYSENSHFLVDQLQEKSSSNSSKREHAQDTSHPLELIDLNVPIPLDDDIDELSLVKNGSGHGRTSQVLLCPNAIKTTQNQQNLRRQSTRNRPPTTRALEALALGFLDVKQKRKAKDAFQEEHLMLGPSRRARAKVRSSENSRSITEASKTEEAENSRSNSNCESTFAAKVQSLVN 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9920394 9923029 + Bpe015811.1 Bpe04g01130 102939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01130 756 MobiDBLite consensus disorder prediction 480 572 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 507 521 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 481 506 - -
Bpe04g01130 756 PANTHER ATROPHIN-RELATED 2 512 - -
Bpe04g01130 756 PANTHER ATROPHIN-RELATED 532 745 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 594 614 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 709 734 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g01130 756 PANTHER PROTEIN, PUTATIVE-RELATED 2 512 - -
Bpe04g01130 756 PANTHER PROTEIN, PUTATIVE-RELATED 532 745 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 709 743 - -
Bpe04g01130 756 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01130 - - - zju:107433269 621.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01130 Bpe05g00841 CCT
Bpe04g01130 Bpe05g00841 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01130 Bpe-Chr4:9920394 Bpe09g00590 Bpe-Chr9:14650377 5.18E-12 dispersed
Bpe03g00452 Bpe-Chr3:23679321 Bpe04g01130 Bpe-Chr4:9920394 3.98E-113 transposed
Bpe04g01130 Bpe-Chr4:9920394 Bpe05g00841 Bpe-Chr5:21637898 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g311 . Blo12g00019 Bda03g01199 . Bpe04g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01530 . . . . . . Bpe05g00841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001104 2 4 2 1 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 1 2 2 3 2 2 7 4 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01130 Bpe_Chr04 FPKM 3.046465 2.862535 3.198857 2.451022 0.0 0.419874 1.445073 0.370791 0.378139 0.636541