Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01133 ATGCAGAATGAAGAAGGACAGATTACAGGGCTTTACATTCCTAGAAAATGCTCTGGCACAAACTGGCTGATTACTTCTAAGAACCATGCTTCTGTTCAGATAAACATCGAGCATTTGGACATGCCCGACGAGAATGGTGTCTACACTTGTCAATTCTCCACATTTGCCCTTTGCGACTTTGTTCTCACTCAGGGAGATGCAGACAGCTCGATGGATCGCCTGTGGCAGAAAAAAAAAGCAGATGGTTGTCTCCGACAACACTACGAGGATGTTTTTGTTGTTCGTTGTTTTCCAGTATAA 300 43.67 MQNEEGQITGLYIPRKCSGTNWLITSKNHASVQINIEHLDMPDENGVYTCQFSTFALCDFVLTQGDADSSMDRLWQKKKADGCLRQHYEDVFVVRCFPV 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9940261 9941809 - Bpe015814.1 Bpe04g01133 102942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01133 99 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bpe04g01133 99 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 - -
Bpe04g01133 99 Pfam Ribosomal protein S21e 1 79 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bpe04g01133 99 PIRSF RPS21e 1 90 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bpe04g01133 99 Gene3D - 1 90 IPR038579 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01133 K02971 RP-S21e, RPS21; small subunit ribosomal protein S21e - csv:101217283 128.257
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01133 Bpe14g01292 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01133 Bpe-Chr4:9940261 Bpe14g01130 Bpe-Chr14:8403136 2.65E-41 dispersed
Bpe04g01133 Bpe-Chr4:9940261 Bpe13g00663 Bpe-Chr13:13420427 5.77E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g322 . . . . Bpe04g01133 . Bma04g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01522 . . Blo02g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g835 . . . . Bpe04g01133 Bpe14g01292 . . . . Cma06g01272 . Car06g01093 . . Cpe08g00376 . Bhi01g00014 . . . . . . . . . . . . . . . . . Lsi05g01802 . . Cme06g00418 . . . Bda13g00029 . . Bma02g00739 . . Cmo06g01280 . . . . . . . . . . . . . . Cla05g00380 Cam05g0413 Cec05g0418 Cco05g0418 Clacu05g0409 Cmu05g0392 Cre05g0454 . Csa03g01137 Chy06g00403 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001177 2 4 1 3 3 2 4 2 2 2 1 2 3 2 2 4 2 4 2 2 2 2 2 1 2 3 2 7 3 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01133 Bpe_Chr04 FPKM 19.794506 22.37772 3.522943 3.980124 0.863499 0.625497 1.506786 2.088397 2.54527 2.30874