Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01142 ATGTCTCTAAAGAGTATAATTCAGGACATGAGGTCTCGCTCGCATCGGGTGGTTCAAGATGGCTCACCCACCATTATGAAAGACGGTTTGGAGCAGAGCTGTTGGGCCTACATGCCCCAGGAGCTTCTGCGTGAGGTTCTTATGCGCATCGAGGTATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTCGTCGCTTGCGCTGGTGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAATATCCGGAAAGTTGACGTTCCCGATCTCTGTCAAGCAGCCTGGGTCAAGGGAGTCTCTTCATAGATGCTTCATAAAACGAAACCGATCCACACAAACTTATTGCCTTTTTCTCAGTTTAACTAATGCCCTCACCGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGGCCCACATGTACAGATTATATCATCTCTATTCGTTCTGATGACGTGTCCAAGGGGAGCACCACCTACGTTGGGAAATTAAGATCCAACTTTCTAGGAACCAAGTTTACAATTTTTGATGGGCAGCCGCCTCATGCGGGAGCGAAGATGACAAAAAGTCGCTCCACCAGGCTTGTAAATCTGAAACAAGTTTCACCCAAGGTTCCCGTAGGAAACTACCCCATTGCTCACATCTCATATGAATTGAATGTACTGGGTTCAAGGGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTGCCTCTTCAATTGCACCTGGGGGAAAGGCTCCCACACAAACTGAGCTTTCACTTAACAATGTTGAATTTTTCCCATCACTCCCATATTTCCGGTCAAGGTCAATTCACATGGATAACTATCTATCAGGACATCTGACCAGTCAGAAAGATGAAATGCTGGTTTTGAGAAACAAGAACCCCAGGTGGCATGAGCAGTTACAATGCTGGTGCTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTTAAAAATTTTCAGTTAGTTGCTTCGCCAGAAAATGGACCAGCTGGACCAGAACATGAGAAAATCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTATTTACAATGGATTATCGGTACCCAATCTCAGCATTCCAGGCTTTTGCAATCTGTCTTAGCAGCTTTGATACCAAGATCGCTTGTGAATGA 1164 46.13 MSLKSIIQDMRSRSHRVVQDGSPTIMKDGLEQSCWAYMPQELLREVLMRIEVSEGAWPPRKSVVACAGVCRSWRVITKEIVKTPEISGKLTFPISVKQPGSRESLHRCFIKRNRSTQTYCLFLSLTNALTDDGKFLLAARKCRRPTCTDYIISIRSDDVSKGSTTYVGKLRSNFLGTKFTIFDGQPPHAGAKMTKSRSTRLVNLKQVSPKVPVGNYPIAHISYELNVLGSRGPRRMQCIMDAIPASSIAPGGKAPTQTELSLNNVEFFPSLPYFRSRSIHMDNYLSGHLTSQKDEMLVLRNKNPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10497415 10499911 + Bpe015826.1 Bpe04g01142 102951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01142 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Bpe04g01142 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Bpe04g01142 387 Coils Coil 386 387 - -
Bpe04g01142 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Bpe04g01142 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Bpe04g01142 387 PANTHER TUBBY-RELATED 1 387 - -
Bpe04g01142 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bpe04g01142 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Bpe04g01142 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Bpe04g01142 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Bpe04g01142 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Bpe04g01142 387 Pfam Tub family 96 382 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01142 Bpe-Chr4:10497415 Bpe07g00349 Bpe-Chr7:2736000 1.73E-150 dispersed
Bpe09g00261 Bpe-Chr9:1905374 Bpe04g01142 Bpe-Chr4:10497415 5.96E-127 transposed
Bpe04g01142 Bpe-Chr4:10497415 Bpe05g00852 Bpe-Chr5:21724757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21315 PF01167 Tub 1.80E-109 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01142 K19600 - zju:107426905 657.136