Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01172 ATGGATTGCAACAAAGAAGAGGCTGTCAGAGCGAGAGACATTGCTGAGAAGAAGATGCAAAGCAAGGATTTTATTGCAGCTCGTAAGATTGTGATCAAGGCTCAACAATTATATCCTAATCTGGAGAATATTTCTCAGATGCTCATGGTTTGTGATGTGCATTGCTCTTTGGAAAAGAGATTGTTTGGGAATGAAATGGATTGGTATGGAATTCTTCGGGTTGAACAAACTGCAAATGAGGAGATAATTAAGAAACAATACAGGAAGTTTGCACTTTCGCTCCATCCAGACAAAAATAAATTTCCTGGAGCGGAAGCTGCTTTTAAGTTGATTGGCGAAGCTCAAAGGATGCTTTTGGACAGAGAAAAACGTTCTCTGCATGATATGAGACGGAAACCAACAGTACCATATCGACCTCCACAAAAAGCTAGTTCATACTCTGGTGCGGGGTTGCGTAGCAACTATAGGAACAATCTTCTGCATCAGCAGCCACCACAACATGCAGAATCAGCTGGTAGCATCAATACTTTCTGGACTGCCTGCCCATTTTGTTCTGTAAGATATCAGTACTATAAGGAGATAGTTAATAGATGTCTCCGGTGTCAAAATTGCAAGAATCCCTTCATTGCATTCGACACAAATGCACCAGGTTTTCAGAGTGCAAGTAACTTGAATCATCATACAACATTTTCCCAGCATAAGGATATTCCAAATCATGATTCTTTCAAAGCTGAGGTTGGAAATCGGGGAAAGCCCTATGTCTGGAATCCTGGAACCAAGTCTCCCAAAAAGATTGAGAACTCATCTGGGACTGCCACAGAAAAGCTGAATCGTAAGATGAAAAGGAAGCATGCAACAGAATCCAGTGAAAGTTGTACTACCGGTAGCAGCTCTGACTTTGAAGAAGATATGTCTATTGGTGAGAATGGTGATCGGTCAGGTGGACAGAATTCTACAGAGATCAATCCACGGAGATCTACACGGCAAAAGCAGCAGGTTTCTTATAATGAAAATTTAATTGATCATGAAGACTTTGCAAGCCTTCCAAAAAAAGTCAATAGGAATGGATCGCACTTCTTAAGTACGGAACCCAATGGTGGGGCTAAAGAGGAGTTATTTAAAGGGGGCTTGCAAACCGGTGCCAGAGAATGCCTAAACAAAACTGATGAACACAGTGATCGGCAGAAGTGTTCTGAAGATTTTGATGACACAAAATCAGATTCATCCAGCCACAGAGTACCTGATTTGGGGTCTTATGATTGTCCTGATGCAGATTTTAATGATTTTGACAAGTTGAGGAGAGATGGTAGTTTTGAAGTTGGACAAATCTGGAGTATTTATGACGATACACATGCAATGCCCAGATACTATGCTAGAATCAATAAAGTTCTGTCTGCTAGATTCAAGGTACAAATGACATGGTTAGAGCCAGATCCAGATGATGAGGATAAAATCAAATGGGTCAGAAAGGGGTTGCCTGTTTCCTGTGGTAAATATAGATTTGGCAAACCTACATTTTCTGACAACCTTCATATGTTCTCTCATTTGGTTTTTTGGGAAGAAGGCAACCGTAGAGATAGATTTGAAATACTTCCACAGAAAGGAGAAACTTGGGCTATCTTCAGGAATTGGAATGTGAGATGGAACTGTCGTGCAGATGCTCATCAATATGAATATGATTTTGTTGAGATCTTGTCAGATTATGCTGAGGATGATGGCGTACATGTTGTATTCTTGGGCAAGATCAAAGGTTTTAAGAGTCTTTTTTGTCGAAAGGTTGGAGAAGGAGAGGAGTTACAAATCCCACCAAGTGAGTTATACAGATTTTCCCACAGAATTCCATCCTTTGCAATGACAGGAGATGAAAGAGAAGGTGTGTCAAAAGGATCTTTTGAACTTGACCCTGCAGCACTTCCCACCAACCTCCTAGAAGTTGCCATTCCTGAGGATTTAAGAGATGAGACTGCTAATATTTGTCCCACTGATATGCGTGCAGAATCTTCACAGCACTCAAATCCTATAAGTGGGTTGAACGATAATGTATCTTTGCGACAATCTGATAACATGAAGAGTATGTACATCAAGGAAGATCCTCCAACAGCAGAAGCTGAAGCTATTGAGATTCCAGCACCAGAATTCTATGATTTTGATGGTGATAAATCTCATGACAAGTTTCAGGTTGGTCATATCTGGGCCCTTTATAGTGACGAGGACGGATTGCCAAAATATTATGGGCAGATAAAGAAAGTTGCTTTACGCGCGGAGTTTTCTGTTGATATTATGTGGCTTTTTCCATGTGGGCTTACAGACAACACCATTCCTTGGCATGACGAAAAGATGCCCATTTCCTGCGGAAGATTCAGAATAAATAGAAAGAACTTCCAGTCCTTCACTTCCACTGCACCGTTTTCGCATTTAATAAAAGCTGATTCTGGCAGTAAGAGAAACGAATATTTCATCTCTCCAAGGAAGGGGGAGATTTGGGCTCTGTATCGCAACTGGACTGCTGAAATTGAATGTTCTGACTTGAAAAACTGTGAATACGATGTTGCTGAAGTCATCAATGAAGATCTACATATACAAGTTCTTAGATTGGAGCTAGTGGATGGTTTGAAATCAGTTTTCAAACCTCAAGTTAAGGAAGGATCGCCTTTGATTGAGGAAATTTCCCGGGTTGAGCTTCTTAAGTTTTCCCATCAGATTCCGGCTTTCCGGTTGACAGAAGAAAGAGGTGGCAGCCTGAGAGGCTTCTTGGAGCTTGATCTTGCTGCTTTGCCCATCGATTACTTTTCTTGA 2796 41.06 MDCNKEEAVRARDIAEKKMQSKDFIAARKIVIKAQQLYPNLENISQMLMVCDVHCSLEKRLFGNEMDWYGILRVEQTANEEIIKKQYRKFALSLHPDKNKFPGAEAAFKLIGEAQRMLLDREKRSLHDMRRKPTVPYRPPQKASSYSGAGLRSNYRNNLLHQQPPQHAESAGSINTFWTACPFCSVRYQYYKEIVNRCLRCQNCKNPFIAFDTNAPGFQSASNLNHHTTFSQHKDIPNHDSFKAEVGNRGKPYVWNPGTKSPKKIENSSGTATEKLNRKMKRKHATESSESCTTGSSSDFEEDMSIGENGDRSGGQNSTEINPRRSTRQKQQVSYNENLIDHEDFASLPKKVNRNGSHFLSTEPNGGAKEELFKGGLQTGARECLNKTDEHSDRQKCSEDFDDTKSDSSSHRVPDLGSYDCPDADFNDFDKLRRDGSFEVGQIWSIYDDTHAMPRYYARINKVLSARFKVQMTWLEPDPDDEDKIKWVRKGLPVSCGKYRFGKPTFSDNLHMFSHLVFWEEGNRRDRFEILPQKGETWAIFRNWNVRWNCRADAHQYEYDFVEILSDYAEDDGVHVVFLGKIKGFKSLFCRKVGEGEELQIPPSELYRFSHRIPSFAMTGDEREGVSKGSFELDPAALPTNLLEVAIPEDLRDETANICPTDMRAESSQHSNPISGLNDNVSLRQSDNMKSMYIKEDPPTAEAEAIEIPAPEFYDFDGDKSHDKFQVGHIWALYSDEDGLPKYYGQIKKVALRAEFSVDIMWLFPCGLTDNTIPWHDEKMPISCGRFRINRKNFQSFTSTAPFSHLIKADSGSKRNEYFISPRKGEIWALYRNWTAEIECSDLKNCEYDVAEVINEDLHIQVLRLELVDGLKSVFKPQVKEGSPLIEEISRVELLKFSHQIPAFRLTEERGGSLRGFLELDLAALPIDYFS 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12966796 12969591 - Bpe015865.1 Bpe04g01172 102981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01172 931 Gene3D DnaJ domain 64 171 IPR036869 -
Bpe04g01172 931 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 385 410 - -
Bpe04g01172 931 PANTHER - 1 930 - -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 229 333 - -
Bpe04g01172 931 PRINTS DnaJ domain signature 69 87 IPR001623 -
Bpe04g01172 931 PRINTS DnaJ domain signature 103 123 IPR001623 -
Bpe04g01172 931 PRINTS DnaJ domain signature 87 102 IPR001623 -
Bpe04g01172 931 CDD DnaJ 67 120 IPR001623 -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 385 414 - -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 310 333 - -
Bpe04g01172 931 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 930 - -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 232 246 - -
Bpe04g01172 931 Pfam Domain of unknown function (DUF3444) 704 909 IPR024593 -
Bpe04g01172 931 Pfam Domain of unknown function (DUF3444) 419 622 IPR024593 -
Bpe04g01172 931 SMART dnaj_3 66 123 IPR001623 -
Bpe04g01172 931 MobiDBLite consensus disorder prediction 289 303 - -
Bpe04g01172 931 Pfam DnaJ domain 67 128 IPR001623 -
Bpe04g01172 931 SUPERFAMILY Chaperone J-domain 63 132 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01172 - - - cit:102618089 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01172 Bpe-Chr4:12966796 Bpe12g00380 Bpe-Chr12:9127746 1.51E-33 dispersed
Bpe05g00257 Bpe-Chr5:15386014 Bpe04g01172 Bpe-Chr4:12966796 6.76E-20 transposed
Bpe04g01172 Bpe-Chr4:12966796 Bpe05g00854 Bpe-Chr5:21733874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01172 Bpe_Chr04 FPKM 7.892338 9.44974 19.710213 21.794325 9.984818 11.125597 10.829853 7.853645 6.845965 7.251335