Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01182 GATTGCTCGAGAAGCTTAGAATCTGAATCAGCTTCTTCTTCAAAGGCCAGCAGCTCAGACTCAGAGGGCCAGTCTGATTCAAGAACAACGCCACAGTGGAATGGCTTCTTCCGGTTGTTGAAAAAAGGATCCGACATGATATTTCCCACCTTCACTCCACTTAAAACTTTCCCTCCTCTTAAAACCCTTCCTCCATTTAAGACCTTCCCTCCTCTTAAAGGTGTCCCAAAACTCACCAGAAGAAAAAGCAGAAGATTTCGAGATGACCTGATTCCGCCCATTGACTCTCCAGTCAAAACTTGTTCCTTAGATGCTGACTTTTCCTGCTTCAAATCTTCATGGAAGAACTTCTCTCTCTTCGAGCTCCAAATCGCAACCAGCAACTTCAGACATGAAAATCTGATTGGGGAAGGGGGTTATGCTGAAGTTTACAAAGGTGAATTGGAGGATGGGGAACTGGTAGCAATTAAGCGGCTTACAAGAGGAAGCCAAGAAGAAATGACTGCAGATTTCTTATCAGAGCTAGGAATTATTGTTCATGTTGATCATCCAAACATTGCAAAAGTTATTGGTTATGGGATTGAAGGCGGAATGCATCTTGTTCTTCACTTGTCTCCTCACGGTAGCCTCGCTTCAATCCTTTACGGAGATAGGAAGATCCTTGATTGGGGAATCAGATATAAGGTTGCTTTAGGCATTGCAGATGGTCTTCTTTATCTTCATCAAGGCTGTCAAAGAAGAATAATACACAGAGACATCAAGGCTTCCAATATATTGCTTTCTGAGGATTTTGAACCTCAGATATGTGATTTTGGGCTTGCGAAATGGCTGCCAGATCAATGGACTCACCACATTGTATCAAAGTTTGAAGGCACATTTGGATATCTTCCTCCAGAGTTCTTCATGCATGGAATGGTTGATGAAAAAACTGATGTATATGCTTTTGGCGTCCTTCTTTTAGAACTAATTACCGGACGTCAATCTTTGGACAGCTCGCAGCAGAGCCTCGTGATGTGGGCCAAACCTCATCTTGCCCATCTGAATATCAAGGAGCTTACTGATCCTTGCCTTGCTCATGCCTTCCATGTAGAACAGATGAATCGCATGGTCGTGACGGCTTCGATGTGCATTCATCAGTCTGCGGTCAATCGGCCTCAAATGAGTCTGGTTGTTCAAATTTTAAAAGGAGAAGAAGGTGGTTTGGAGCTTCTTAAAAGTAGACAAAAATCGGAACTTAAACGAATATCCTCGGAGGAGCTACTTGACGCAGAAAAGTGTAATTCGACCAAGTACGTAAACGATCTTAGTCGTCACTTGGAGGTGGTTTTAGGCACTTCCAAATAG 1344 43.15 DCSRSLESESASSSKASSSDSEGQSDSRTTPQWNGFFRLLKKGSDMIFPTFTPLKTFPPLKTLPPFKTFPPLKGVPKLTRRKSRRFRDDLIPPIDSPVKTCSLDADFSCFKSSWKNFSLFELQIATSNFRHENLIGEGGYAEVYKGELEDGELVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIAKVIGYGIEGGMHLVLHLSPHGSLASILYGDRKILDWGIRYKVALGIADGLLYLHQGCQRRIIHRDIKASNILLSEDFEPQICDFGLAKWLPDQWTHHIVSKFEGTFGYLPPEFFMHGMVDEKTDVYAFGVLLLELITGRQSLDSSQQSLVMWAKPHLAHLNIKELTDPCLAHAFHVEQMNRMVVTASMCIHQSAVNRPQMSLVVQILKGEEGGLELLKSRQKSELKRISSEELLDAEKCNSTKYVNDLSRHLEVVLGTSK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13492975 13495049 + Bpe015878.1 Bpe04g01182 102991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01182 447 Gene3D Transferase(Phosphotransferase) domain 1 206 422 - -
Bpe04g01182 447 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 13 432 - -
Bpe04g01182 447 MobiDBLite consensus disorder prediction 1 30 - -
Bpe04g01182 447 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Bpe04g01182 447 Pfam Protein kinase domain 130 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01182 447 SMART serkin_6 129 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01182 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Bpe04g01182 447 SUPERFAMILY Protein kinase-like (PK-like) 110 394 IPR011009 -
Bpe04g01182 447 ProSiteProfiles Protein kinase domain profile. 129 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01182 447 PANTHER OS08G0249100 PROTEIN 13 432 - -
Bpe04g01182 447 Gene3D Phosphorylase Kinase; domain 1 101 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01182 - - - mnt:21394551 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01182 Bpe-Chr4:13492975 Bpe09g00607 Bpe-Chr9:14805683 5.06E-168 dispersed
Bpe04g01182 Bpe-Chr4:13492975 Bpe01g00694 Bpe-Chr1:5128835 4.31E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63313 PF00069 Pkinase 1.20E-40 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01182 Bpe_Chr04 FPKM 48.898155 52.120663 49.834614 52.393925 48.259678 42.434948 50.495789 42.795769 42.812557 41.825668