Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01185 ATGGATCAGTTTGATGAATCCTTTCAAAACAAAGCAGAGGCAGTATTGCGAGTTTTAGCTTTAAGAAGATGGGTTAAAGAGGATGATGTACCCTGCCAAATTGAAGAGGGCCTGTTCTTGGGTTCTGTTGCAGCGGCTTCTAACAAGAATGAACTGCAGAGGTTGAGAGTAACCCACATTTTAACCTTTTCATGTTCCCTACTGCCTTCGCATCCAACTGATTTTACTTATAAAGTGATCGAAGTAACGGACAAAGCGGACGAAAATATCACAAGGTACTTTGATGAGTGTTTCAATTTTATTGATGAAGCTAGACGGTTGGGTGGTGGCATACTTGTGCATTGCTTCGCCGGACGATCCAGAAGTGTGACTATTGTAGTTGCCTATTTGATGAAAAGCTGTGGTGTGAGTCTTTCTGAAGCACTAGAGCTTGTGAAGCTTAAACGGCCACTGGCAGCTCCTAATGTCGGTTTCATGTTACAATTGAAGGATTTTGAAAAATCTCTTCAAGGTTTGTATATTGAGACATAA 531 41.24 MDQFDESFQNKAEAVLRVLALRRWVKEDDVPCQIEEGLFLGSVAAASNKNELQRLRVTHILTFSCSLLPSHPTDFTYKVIEVTDKADENITRYFDECFNFIDEARRLGGGILVHCFAGRSRSVTIVVAYLMKSCGVSLSEALELVKLKRPLAAPNVGFMLQLKDFEKSLQGLYIET 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13571777 13573593 + Bpe015882.1 Bpe04g01185 102994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01185 176 CDD DSP 31 164 - -
Bpe04g01185 176 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311|GO:0016791
Bpe04g01185 176 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Bpe04g01185 176 Gene3D Protein tyrosine phosphatase superfamily 32 174 IPR029021 -
Bpe04g01185 176 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 16 170 - -
Bpe04g01185 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 170 IPR029021 -
Bpe04g01185 176 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Bpe04g01185 176 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Bpe04g01185 176 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 16 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01185 - - - vvi:100264956 238.424
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01185 Bpe-Chr4:13571777 Bpe12g00460 Bpe-Chr12:10343710 2.24E-26 dispersed
Bpe04g01185 Bpe-Chr4:13571777 Bpe04g01698 Bpe-Chr4:22896576 1.71E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004089 1 2 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 7 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01185 Bpe_Chr04 FPKM 5.126126 4.454249 8.217525 6.618109 4.195082 3.983812 6.203537 9.191036 8.668154 11.598891