Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01189 ATGCTTGTTTCTCCGACACCCTCCCGGTTTCTTGCATTCTCTCTTCGACCCTCCTTTCTCAAATACCTCTCCACCTTCCCAGATGGAAAATCTGCGTCCGACCCACTACACTGTCTTCGGGTGTTCTTCCATTGCTCAAACTATCTACCCCACTTCGATTACGTGCTCTCTTTGGTCTCCGTTCTGAAGGCTTGCTCTTCTCTTTTAGCTATTTCCCATGGCCGACAAATCCATTCCCTCCTCGTCAAAACCGGGTACGTCTCTAACACTTTCGTTCGTAATAGTTTGATTAACATGTACGCCAAATGCGGATGTCTTGACGATGCTGAGGTAGTTTTTGAATCCTTTTCTGAACTGGATCCTGTTTCTTGTAATATTATGGCTGCTGGGTACATGAAATCTCGCCAACCGGTAAAAGCCCGCCAAGTGTTTGATGTAATGCCCAGCAAAAATTGCGTCTCTTATACCACAATGATAATGGGGTATGCTAAGAATGGTTTTTGGAATGAAGCAATTGAGTTTTTCAAAGTTATGAGATCTGAGGCTGTCGTTCCTAACGAGGTGACTATGGCAAGCGTGATCTCTGCTTGTTCTCACGTCGGTGCCATTTGGGATTGTTGGAAGCTTCATGGTTTGGCAATCAAACTTCAGCTTGTGGGATTAGTTCTTATTTCAACAAATCTTCTGCACTTTTATTGCCTTCGTTCACGTTTAGAAGATGCTATAAGATTGTTTACTAAGATGGCAGACAAAAATATAGTATCATGGAATGTAATGTTGAATGGGTATGCAAAAGCAGGGTTGGTCGATCAGGCGAGAGATTTGTTTGAGATAATGCCGGAAAAAGATGTAGTTTCTTGGGGCACAATGATTGATGGGTACGTGCAAGTGAAAAGGTTAAATGAAGCTGTGTTGATGTACAGTGCAATGCGATGTTGTGGTGTAGAGCCTAACGAAGTTATGATTGTTGATTTAGTTTCCGCTTGTGGACAGACAATGTCATTTGTGGAAGGTCAGCTATTTCATGGTGTAATTGTGAAAATAGGCTTTGACTGCTATGAGTTCATACAGACAACTCTCATTAGTTTCTATGCCGGGTGTGGAACAATTGATCTCGCGGAGTTGCAATTTCAAGCAAGTATAAAGCAGCATATTGCCTCTTGGAATGCCCTCATCTCAGGTTTCATGCGAAATGGAATGATTGAACAGGGGAGGAAAACATTCGAAGGGATGCCAGAAAGAGACATATTTTCATGGACTATCGTTATTTCAGGATACACACAAAGCGAACAACCTGAAATGGCTTTAGAACTCTTTCGTAGAATGGTGGAAAGTGGGGTGCAACCGAATGAAATTACGATGGTTAGTGTTTTATCTGCCATTGCCAATCGAGGCCAATTGACAGATGGGAGATGGGCTCATGAATATATTTGTAATAACGCAATCTCTTTGTCAGACAATTTAAGTGCGGCCCTCATTGACATGTACGCCAAATGTGGGAGCGTCAATAATAGCTTGGATTTGTTTTATGAAGTCCGACATAAAGTCTCGTCTGTCTCACCCTGGAATGCAATTATATGCGGGTTGGCCATGCACGGATATTCAAGTTTATCACTCAAAATTTTCAGCGATTTGCAAAAGCGGAAATTACCACTCAATTCAATCACATTTATCGGCGTCCTAAGTGCCTGTTGCCATGCTGGTTTAGTCGATGCGGGGGAAAGGTATTTTGAGATGATGAAGAGTGTTTACAAGATAGAACCAAACAAAAAGCACTATGGCTGTATGGTGGATCTCTTGGGTAGAGCTGGACGGGTGAAAGAGGCCGAGGAAATGATTAGAAACATGCCGATAGAGGCAGATGTGGTGATATGGGGAACCTTATTAGCGGCTTGTAGAACTCATGGACATGTCGAAATAGGAGAAAGAGCTGCAGAGAACCTGGCTAGAGCTGAACCAACTCATGGGGGCGGTAGAGTTCTCTTGTGCAACATATATGCAGATTCTGGAATGTGGGAAGATGCATATTTAGTGAGGAAGGCAATGCAAAGTCTAAATATGCAGCAATCGCCAGGATATAGCGGTGTTGTTTGA 2094 42.93 MLVSPTPSRFLAFSLRPSFLKYLSTFPDGKSASDPLHCLRVFFHCSNYLPHFDYVLSLVSVLKACSSLLAISHGRQIHSLLVKTGYVSNTFVRNSLINMYAKCGCLDDAEVVFESFSELDPVSCNIMAAGYMKSRQPVKARQVFDVMPSKNCVSYTTMIMGYAKNGFWNEAIEFFKVMRSEAVVPNEVTMASVISACSHVGAIWDCWKLHGLAIKLQLVGLVLISTNLLHFYCLRSRLEDAIRLFTKMADKNIVSWNVMLNGYAKAGLVDQARDLFEIMPEKDVVSWGTMIDGYVQVKRLNEAVLMYSAMRCCGVEPNEVMIVDLVSACGQTMSFVEGQLFHGVIVKIGFDCYEFIQTTLISFYAGCGTIDLAELQFQASIKQHIASWNALISGFMRNGMIEQGRKTFEGMPERDIFSWTIVISGYTQSEQPEMALELFRRMVESGVQPNEITMVSVLSAIANRGQLTDGRWAHEYICNNAISLSDNLSAALIDMYAKCGSVNNSLDLFYEVRHKVSSVSPWNAIICGLAMHGYSSLSLKIFSDLQKRKLPLNSITFIGVLSACCHAGLVDAGERYFEMMKSVYKIEPNKKHYGCMVDLLGRAGRVKEAEEMIRNMPIEADVVIWGTLLAACRTHGHVEIGERAAENLARAEPTHGGGRVLLCNIYADSGMWEDAYLVRKAMQSLNMQQSPGYSGVV 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14124143 14126236 - Bpe015887.1 Bpe04g01189 102998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01189 697 PANTHER - 389 695 - -
Bpe04g01189 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 150 IPR002885 -
Bpe04g01189 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Bpe04g01189 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 414 IPR002885 -
Bpe04g01189 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 556 589 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 387 416 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 417 451 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 593 623 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 254 285 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Bpe04g01189 697 TIGRFAM PPR: pentatricopeptide repeat domain 122 153 IPR002885 -
Bpe04g01189 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat family 150 198 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat family 415 462 IPR002885 -
Bpe04g01189 697 Gene3D Tetratricopeptide repeat domain 47 116 IPR011990 GO:0005515
Bpe04g01189 697 Gene3D Tetratricopeptide repeat domain 487 697 IPR011990 GO:0005515
Bpe04g01189 697 PANTHER - 57 132 - -
Bpe04g01189 697 PANTHER - 124 269 - -
Bpe04g01189 697 PANTHER - 57 132 - -
Bpe04g01189 697 PANTHER - 124 269 - -
Bpe04g01189 697 PANTHER - 208 403 - -
Bpe04g01189 697 Gene3D Tetratricopeptide repeat domain 217 338 IPR011990 GO:0005515
Bpe04g01189 697 Gene3D Tetratricopeptide repeat domain 339 471 IPR011990 GO:0005515
Bpe04g01189 697 Gene3D Tetratricopeptide repeat domain 117 206 IPR011990 GO:0005515
Bpe04g01189 697 PANTHER - 389 695 - -
Bpe04g01189 697 PANTHER - 208 403 - -
Bpe04g01189 697 Pfam PPR repeat 94 115 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 556 582 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 285 315 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 226 253 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 491 513 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 522 549 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 593 616 IPR002885 -
Bpe04g01189 697 Pfam PPR repeat 254 283 IPR002885 -
Bpe04g01189 697 Pfam E motif 635 696 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01189 - - - qsu:111994107 922.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01189 Bpe-Chr4:14124143 Bpe10g00099 Bpe-Chr10:1506576 2.63E-26 dispersed
Bpe04g01189 Bpe-Chr4:14124143 Bpe05g00127 Bpe-Chr5:2842824 4.49E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01189 Bpe_Chr04 FPKM 0.889682 0.876472 0.0 0.113226 0.625122 0.509611 0.321967 0.0 0.0 0.0