Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01193 ATGCATCTGTTGAATGCCGCGTTGGCGACCCGGATGCTTTCTCGCACGACGGCGATCGGACTGGAGTTGAGGAGCGACATCGCTTTTGGAACGGCGTGGTGGTTCATCTATGCGGGCGTATGCTGCTGCCTCGTCCTCTTCGCCGGTATGATGTCTGGTTTAACCCTTGGCCTCATGTCTCTCAGCCGCGTCGACCTTGAAATTCTTGAGCGGAGCGGCACTTCCTCCGAGAAGAAACAGGCTGCTACCATTCTTCCAGTAGTCAAAAAGCAGCATCAGCTCCTCGTTACGTTACTTCTATGCAATGCTGCTGCGATGGAGGCTCTTCCTCTGTATCTTGATAAACTCTTCAATCAATATATTGCTATTATTCTATCTGTGACTTTTGTGTTAGCTTTTGGGGAAGTCATACCGCAATCAATATGTTCTAGGTATGGACTTGCTGTAGGGGCGAGTTTGGTATGGGTTGTACGAATCTTGATGATCATATGCTATCCAATTGCCTATCCCATTGGGAAGATTCTGGACTGCTTACTGGGACATGATGAGGCATTATTTAGGCGTGCTCAGTTAAAAGTTCTTGTCTCCATCCATGGCCAAGAGGCTGGAAAGGGCGGTGAACTTACCCACGACGAGACAACAATCATTAGTGGAGCACTCGACTTGACTGAAAAGACAGCTGAGGAGGCTATGACGCCAATTGAATCAACTTTTTCCTTGGATGTGAATTCAAAATTGGACTGGGAAGCAATGGGAAAAATTCTGGCTCGTGGTCATAGTCGAGTTCCTGTCTATTCTGGGAATCCAAAGAATATTATAGGGCTTCTTCTGGTTAAAAGTCTTCTTACTGTTCGACCTGAAACAGAGACACCAGTCAGTGCTGTTTCCATTAGGAGGATCCCCAGGGTTCCGTCAGATATGCCACTTTATGATATACTGAATGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCTGTGGTGAAAGCAAGAGGAAAAAGCAAAATTCTTCCACCAACAATGGATACAGAGGAAGCTGAAGAAAAGATAGTTATAATTGGTGACGCTCAACTTACTACTCCTTTACTAAGCAAAAATGTTGAAAAATCCAACAGTGTTGTAGTTGACATTGACAAAAGTTCCATGCCAACCAGCATAAGTAGACAAACTTCTCTACAGCATAATGATGCCACTACAGTTGTATCAAAAGAGGATATTGAAGATGGAGAAGTTATTGGTATCATCACCCTCGAGGATGTGTTTGAGGAACTTCTGCAGGAAGAGATTGTGGATGAAACTGATGAATATGTTGATGTTCACAAAAGAATTCGAGTGGCAGCAGCAGCTGCTGCTTCTTCTGTGGCAAGAGCTCCATCAGTTAGGAGATTAACTGCCCATAAAGGAGCTGGAGGGCTGAATAAGCAGGGCCAAACTCCGAAGAAATCTGCCACAGATGACTCTGTAAAATTGCTGGGGACCTCTGCCTAG 1485 45.12 MHLLNAALATRMLSRTTAIGLELRSDIAFGTAWWFIYAGVCCCLVLFAGMMSGLTLGLMSLSRVDLEILERSGTSSEKKQAATILPVVKKQHQLLVTLLLCNAAAMEALPLYLDKLFNQYIAIILSVTFVLAFGEVIPQSICSRYGLAVGASLVWVVRILMIICYPIAYPIGKILDCLLGHDEALFRRAQLKVLVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKSKILPPTMDTEEAEEKIVIIGDAQLTTPLLSKNVEKSNSVVVDIDKSSMPTSISRQTSLQHNDATTVVSKEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSVRRLTAHKGAGGLNKQGQTPKKSATDDSVKLLGTSA 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14333948 14337790 - Bpe015891.1 Bpe04g01193 103002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01193 494 Pfam Cyclin M transmembrane N-terminal domain 41 211 IPR002550 -
Bpe04g01193 494 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 486 IPR045095 GO:0010960
Bpe04g01193 494 Gene3D - 212 351 IPR046342 -
Bpe04g01193 494 Gene3D - 352 431 IPR046342 -
Bpe04g01193 494 ProSiteProfiles CNNM transmembrane domain profile. 30 212 IPR002550 -
Bpe04g01193 494 PANTHER - 1 486 - -
Bpe04g01193 494 SUPERFAMILY CBS-domain pair 216 425 IPR046342 -
Bpe04g01193 494 MobiDBLite consensus disorder prediction 464 494 - -
Bpe04g01193 494 MobiDBLite consensus disorder prediction 474 494 - -
Bpe04g01193 494 CDD CBS_pair_CorC_HlyC_assoc 226 331 IPR044751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01193 K16302 CNNM; metal transporter CNNM - twl:120000120 749.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01193 Bpe05g00754 CCT
Bpe04g01193 Bpe05g00754 ECH
Bpe04g01193 Bpe14g01325 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01193 Bpe-Chr4:14333948 Bpe05g00754 Bpe-Chr5:20935978 0 dispersed
Bpe04g01193 Bpe-Chr4:14333948 Bpe04g00212 Bpe-Chr4:1456776 3.17E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01193 Bpe_Chr04 FPKM 3.327441 3.091673 6.482632 6.84364 24.958439 25.746403 24.904732 12.52062 12.373083 10.395781