Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01212 ATGGATCCATTGGTGGAAGCACGGGGCTCTGACTGTTTGGTCAGTCTGGAGTGCTTTCTGAACGTTGTCAGGGCCCTTGGCATGGGGTGCTGCCTATCTGGAGATAATGCCTCTTCCATTCGTGCCATTAAATATTTTCCAGTAGCTTCCTCTTATGAGGAACAGGCCATTTTACGGTGGAGGAATTCCAGGAGGAAGGTGATCAGAAAGGATTCCTCATCCTATAACACTTTGGAATCGAAAATGGAGATGCGGCTTCATCGTATTCCTGGCAGGATATTTTTGAATGGCTTTACAGATTCTGCTTCCCTCTTCACCAAGCAAGGCAGGAAAGGTGTTAATCAGGATTCGATGATTTTTTGGGAGAATTTTGGTACCAAAGAAGACACAATTTTTTGTGGTGTCTTTGATGGCCATGGGCCAAATGGTCATTTGGTTGCTAAGAAAGTGAGGGATTCTCTTCCTTTAAAGCTAAGTTCCCAGTGGGAATTAGATGCTATGTGTAAGGATGGTCATAATGGCAGCAGTCAGGATAAAAGGCAAGAGATGACTGAGTTTGCTCCATTTGAATTGATTAATGAGGATTCAAAAACCATCCTTCGGGAGCGTCAAAGCAATAACTATGAATTATTGATAACATTAACGACGGCATTCTTGAAGGCTTTTAAAGTAATGGATAAAGAACTCAAGCTGCATCCTCATATTGATTGCTTTTGCAGCGGGGCAACAGCAGCAACCGTTGTTAAGCAGGGGCAAGACCTTATTATTGGGAATCTTGGGGACTCAAGAATTATACTAGGTACAAAAGATGATGATGAATCACTTGTTGCAATACAGTTGACTGTAGATCTAAAGCCAAATCTCCCTAGAGAAGCTGAAAGAATAAATAATTGTAAAGGACGAGTTTTTGCTCTACCAAGTGAACCCGAGGTTGCTCGAGTGTGGATGCCCAACTGTGACTGCCCTGGTCTTGCCATGGCTCGTGCATTTGGAGATTTTTGCTTAAAAGACTTTGGCTTGATCTCTGTCCCAGACATTTTCTATCATCGTGTCACCGAGAGGGATGAGTTTGTTGTACTTGCAACAGATGGGGTGTGGGATGTTCTTTCCAATCAAGAAGTGGTAGACATAGTTGGAGCTGCCTCAAAATCTTCTGCAGCTCGAGTTGTTGTGGAGTCAGCAATTCAAGCTTGGAGATACAAGCACCCTTTTGCAAAAATTGATGACTGCGCTGTAGTTTGCCTCTTCCTCAACTCAAACACTGGCAATAGTTATTACGCAAATCCCAAAATTCTGGAATTTCAGGAACCTCCGTAA 1317 43.13 MDPLVEARGSDCLVSLECFLNVVRALGMGCCLSGDNASSIRAIKYFPVASSYEEQAILRWRNSRRKVIRKDSSSYNTLESKMEMRLHRIPGRIFLNGFTDSASLFTKQGRKGVNQDSMIFWENFGTKEDTIFCGVFDGHGPNGHLVAKKVRDSLPLKLSSQWELDAMCKDGHNGSSQDKRQEMTEFAPFELINEDSKTILRERQSNNYELLITLTTAFLKAFKVMDKELKLHPHIDCFCSGATAATVVKQGQDLIIGNLGDSRIILGTKDDDESLVAIQLTVDLKPNLPREAERINNCKGRVFALPSEPEVARVWMPNCDCPGLAMARAFGDFCLKDFGLISVPDIFYHRVTERDEFVVLATDGVWDVLSNQEVVDIVGAASKSSAARVVVESAIQAWRYKHPFAKIDDCAVVCLFLNSNTGNSYYANPKILEFQEPP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16522169 16526213 + Bpe015918.1 Bpe04g01212 103021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01212 438 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 28 423 - -
Bpe04g01212 438 PANTHER ALPHABET, ISOFORM E-RELATED 28 423 - -
Bpe04g01212 438 Pfam Protein phosphatase 2C 196 395 IPR001932 -
Bpe04g01212 438 CDD PP2Cc 101 417 IPR001932 -
Bpe04g01212 438 ProSiteProfiles PPM-type phosphatase domain profile. 101 417 IPR001932 -
Bpe04g01212 438 SMART PP2C_4 89 415 IPR001932 -
Bpe04g01212 438 Gene3D - 99 420 IPR036457 -
Bpe04g01212 438 SUPERFAMILY PP2C-like 98 418 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01212 Bpe-Chr4:16522169 Bpe05g00769 Bpe-Chr5:21055939 0 dispersed
Bpe14g00255 Bpe-Chr14:2667138 Bpe04g01212 Bpe-Chr4:16522169 7.83E-97 dispersed
Bpe04g01212 Bpe-Chr4:16522169 Bpe09g00681 Bpe-Chr9:15406769 4.44E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01212 - - twl:120005422 520.776