Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01238 ATGGCGGAGGGCTTTGAGGGCTGCCATGTCCCACAGCAGAGCAGAAGAGATAAACTACGAGTCGTTACGGCCCAGAATCACCCTCCTTGTCTAGCACCCACCATTAATCTTCATCGTTTTGCAGGATTACTCCCTCTGTACGATCCGTCTTCGCTTATCTCCTCTGATTTACTAACCTGCGCCAGTACCACCGGCCAAGATTTTCACAACCACCACCAGACTAGCCTACTGCCTGCTCTGTCCGAAGGTTGCAAAGAAAACGCAGGTTGTTCGATAAAAGAAGGCGTAAATTTGATGGGCTTTGCTGGTAATCTTATGAATACTCCTCCATCTACTTCGAATTCTCGTCTGCATCAAACTCAACATCCTTGCTTTGATCTTCAGTCTTCGTTTCCTATGAATCCTAGCCCTATTCAAGATATTAACTCTAACCCTTTATTTTACTCGTCGCATACCCTCCAACATCGCAGAGATTTCGACCACTCTTATAGTAGTGGTGGAGAAGTGGTCGTTTTTAAGCCAGAACCTCTATCTTTATCACTTTCCTCTCATCCCACTTACCAGAACAGTCACCAGCTAGAACTAAATCTACAAAGATATGGGTCTGGACTTTATCCGTCTCCCACTGTTGGGTCTATGTCAAATAATATATCGAGGAGCTCAGTGCCTCTCGGTCCTTTTACAGGCTATGCTTCCATTCTGAAAGGGTCTAGGTTTTTAAGGCCTGCACAGCAGTTGCTTGAGGAGTTTTGTGAAATTTGGTGTCAAGGGAATTACAGCGACAAGTTAGAGACTGATTCAGGCTTGATGGACTCGCCTTCCGAGACTTTAAGCGGAATCGTCGATGACTCTTTTGGCAGCGCTGGTGATGGAGGTGAAAGCCGAAGAAAAAAGTCTAGGCTTATTTCCATGCTTGATGAGGTCTACAGAAGATACAAGCAATACTACCAGCAAATGCAGGAAGTAGTTGCATCCTTCGAATGTGTTTCTGGCCTTGGCAATGCAGCCCCTTATGCAAATCTGGCTATAATATCAATGTCTAAGCATTTCAGATGCCTGAAAAATGCAATTTCGGATCAACTTCATATCACCAACAAGGCTCCGAGTAATTATTGCCAGAAATACGTTCCGAATTCGGGATTTCTTGACCAGCAACCTGTTTGGCGACCTCAACGTGGACTTCCTGAGCGGGCAGTGACCATTCTTCGAGCCTGGCTTTTCGAACATTTCCTCCACCCTTACCCAACGGATACAGATAAGATCATGTTGGCGAAACAGACAGGTCTGTCACGGAGCCAGGTTTCCAACTGGTTTATCAACGCAAGAGTGAGGCTTTGGAAGCCAATGGTAGAAGAAATACACATGCTTGAAACAAGACAAGGTCAAAAACCACTGGCGAGGGAGGATCGGATTGCCAATCGAACAAGTGATCATCTGCCTTCAACAAACTCACTCTTGTCAGATGATGCTTCCAAGTCCACCCAACTGGTTCAAGACATTCCCTCCAAACGAACGAAAAATGAACTTCAAAATCTGGCCATGGCAAATGAAGGGCCGTTGAATCTGTCGTATAATAATTTGTCTAGCCAGGATCCACAAATGGATGTAAATGTGAGCATCGCTGGTGGCAATGGTGGTGTTTCACTTACTCTTGGCCTGCACCAGAACAATGTTATCGATTTATCAGAGCCGTTTCCGATAAATGCAGTGCAACGCTATGGCTTAGGCATCGAGGATAATATCAATGGTGATGGGTATGTCATGGGTGGTTTTGAAGCTCAAAGTCGGCACTTTGCGAGAAACGTAATGGGAGGGCAGCTTTTGCATGATTTTGTTGGCTGA 1842 45.49 MAEGFEGCHVPQQSRRDKLRVVTAQNHPPCLAPTINLHRFAGLLPLYDPSSLISSDLLTCASTTGQDFHNHHQTSLLPALSEGCKENAGCSIKEGVNLMGFAGNLMNTPPSTSNSRLHQTQHPCFDLQSSFPMNPSPIQDINSNPLFYSSHTLQHRRDFDHSYSSGGEVVVFKPEPLSLSLSSHPTYQNSHQLELNLQRYGSGLYPSPTVGSMSNNISRSSVPLGPFTGYASILKGSRFLRPAQQLLEEFCEIWCQGNYSDKLETDSGLMDSPSETLSGIVDDSFGSAGDGGESRRKKSRLISMLDEVYRRYKQYYQQMQEVVASFECVSGLGNAAPYANLAIISMSKHFRCLKNAISDQLHITNKAPSNYCQKYVPNSGFLDQQPVWRPQRGLPERAVTILRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKPLAREDRIANRTSDHLPSTNSLLSDDASKSTQLVQDIPSKRTKNELQNLAMANEGPLNLSYNNLSSQDPQMDVNVSIAGGNGGVSLTLGLHQNNVIDLSEPFPINAVQRYGLGIEDNINGDGYVMGGFEAQSRHFARNVMGGQLLHDFVG 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17992014 17995123 - Bpe015943.1 Bpe04g01238 103047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01238 613 SMART HOX_1 388 452 IPR001356 GO:0003677
Bpe04g01238 613 ProSiteProfiles 'Homeobox' domain profile. 385 448 IPR001356 GO:0003677
Bpe04g01238 613 Gene3D - 391 453 - -
Bpe04g01238 613 SUPERFAMILY Homeodomain-like 390 455 IPR009057 -
Bpe04g01238 613 MobiDBLite consensus disorder prediction 473 496 - -
Bpe04g01238 613 Pfam Associated with HOX 233 358 IPR006563 -
Bpe04g01238 613 Pfam Homeobox KN domain 405 444 IPR008422 GO:0003677|GO:0006355
Bpe04g01238 613 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 583 - -
Bpe04g01238 613 SMART prehox3 228 359 IPR006563 -
Bpe04g01238 613 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 40 583 - -
Bpe04g01238 613 MobiDBLite consensus disorder prediction 476 496 - -
Bpe04g01238 613 CDD homeodomain 388 449 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00869 Bpe04g01238 CCT
Bpe02g00869 Bpe04g01238 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00200 Bpe-Chr1:1221723 Bpe04g01238 Bpe-Chr4:17992014 2.43E-71 dispersed
Bpe04g01238 Bpe-Chr4:17992014 Bpe11g00665 Bpe-Chr11:5111635 2.22E-71 dispersed
Bpe11g01301 Bpe-Chr11:9724154 Bpe04g01238 Bpe-Chr4:17992014 4.74E-07 dispersed
Bpe02g00869 Bpe-Chr2:6655885 Bpe04g01238 Bpe-Chr4:17992014 4.01E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21320 PF07526 POX 1.40E-38 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01238 - - vvi:100266680 756.518