Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe04g01242 | ATGTCCCACATTGATCTGGAATCCGGCGGACACCAACGTTCGGTAACGGGAAGTGACGTAAGCGTCGAGGATAGCGTCTACTTCTCCGACGCCGACGAGGATTCCTGCTATTCTCAGTTCTTCTCGCCAAACGGCGGTTCTTACGACGAGTACATGTTCGCCCTCAGCTTCGCCGGAATCCTTTCGGCTTCGCAAAGAGCGTCGTCGGCGGCGGATTCTTCGGTGAAAGTCGAAATCGAAAGTGGGGTAGCTGAAATCAAGACGCATTTGGCTAAAGTAGAGAGAGATTGCAGAATTTGTCATCTGGGTTTGGAAAGTAACAGCCGGGAGTCCGGTGTTCCGATCGAATTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGACCTGGTTCAAAATCAAAGGAAATAAGACTTGCGAGATTTGTCATTCAATTGCTCGGAATGTGCTGGGAGCCCACGAGATTGAGCTGCTGGAGCAGACCAACGAGGCCAGCAATGCCTCCTCAATTGAATCGGCACCGGCCCCTCCTGTAGAGAGCCAAAGGTTCTGGAGTGGACGTAGGTTCCTGAATTTTCTGCTTGCCTGTGTGGTGTTTGCATTTGTCATTTCATGGCTCTTGCACTTCAATGTTCCATCATAG | 660 | 51.06 | MSHIDLESGGHQRSVTGSDVSVEDSVYFSDADEDSCYSQFFSPNGGSYDEYMFALSFAGILSASQRASSAADSSVKVEIESGVAEIKTHLAKVERDCRICHLGLESNSRESGVPIELGCSCKEDLAAAHKHCAETWFKIKGNKTCEICHSIARNVLGAHEIELLEQTNEASNASSIESAPAPPVESQRFWSGRRFLNFLLACVVFAFVISWLLHFNVPS | 219 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18140326 | 18141841 | - | Bpe015947.1 | Bpe04g01242 | 103051 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe04g01242 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 156 | IPR013083 | - | |
| Bpe04g01242 | 219 | PANTHER | ZINC FINGER, RING-CH-TYPE | 2 | 219 | - | - | |
| Bpe04g01242 | 219 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 89 | 155 | IPR011016 | GO:0008270 | |
| Bpe04g01242 | 219 | PANTHER | OS01G0850200 PROTEIN | 2 | 219 | - | - | |
| Bpe04g01242 | 219 | SUPERFAMILY | RING/U-box | 94 | 151 | - | - | |
| Bpe04g01242 | 219 | CDD | RING_CH-C4HC3_MARCH | 97 | 149 | - | - | |
| Bpe04g01242 | 219 | SMART | ringv_2 | 96 | 149 | IPR011016 | GO:0008270 | |
| Bpe04g01242 | 219 | Pfam | RING-variant domain | 97 | 148 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe01g00786 | Bpe-Chr1:8273471 | Bpe04g01242 | Bpe-Chr4:18140326 | 1.74E-27 | dispersed | |
| Bpe04g01242 | Bpe-Chr4:18140326 | Bpe15g01136 | Bpe-Chr15:20375473 | 2.51E-62 | dispersed | |
| Bpe03g01022 | Bpe-Chr3:29632886 | Bpe04g01242 | Bpe-Chr4:18140326 | 9.87E-121 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe04g01242 | - | - | csv:101218915 | 319.316 |