Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01330 ATGGTTTTTTCCTCCATGCCAGCTTATCTTGATCCTTCCAACTGGCAACAGCAAACAATCAATCAAGTCGGAAGTAGTTACAGACCTAGCTCTCAACTTCTTCCTCCACAGCCACCACCTCCTCCGCCGCTTCAGCACACTCATGGCGGTGCAATGTCCGGATCCGTCAGACCAGGTTCCATGTCGGAGCGAGCTCGAATGGCTAACGTACCCTTACCGGAAGCAGCCCTGAAATGCCCGCGATGCGAATCTACAAACACTAAGTTTTGTTACTTCAACAATTACAGTCTTACCCAGCCTCGCCATTTTTGTAAGACCTGTAGAAGGTACTGGACCCGAGGAGGCGCTCTTAGAAACGTCCCAGTTGGCGGCGGCTGTCGCCGGAACAAAAGAAGCAAAGGCAGTAGCTCCAAATCGCCGATCAACTCCGACCACCGATCCGGTGACCCTGATTCGTCGAATATGATTTCTTCGAGCAGTGGACGCACTGATATATTAAGCCTGGGCCCCCAGATCCCACATCTAAGATTTATGGCTCCTCTTCATAACCTCAACGAGTTTGCCTCCGGCGAGATCGGCTTAAACTATGGCCTTAATTACAGTACTATTTCTGCACCGATGAGTGGAGCCGGCGACCTAAATTTTCAACAGGAAGTTACTTTAGGCGGTGGTGGAGGAGGAGCTGGTTCTCTTTTAGGTCTAGATCAACAATGGCGGATACAGCAAATGCCGCAGTTTCCTTTTCTTCCCGGATTCGACCCATCAACGGCGCTGTTTGAAAGGCCGCCGAGTTTAGGGATCAATCACTTGCCCTCAGTGAAAATGGAAGAAACCCAGCAAGATCAAGGGTTTAACTTGGGAAGACAGTTCTTAGGATCAGTTGCAGGAAATGAACAATTCTGGAGTGGCAACAATGCCTGGTCAGATCTTTCTGGTTTCAGCTCTTCTTCTACAACCAGTAATCCTCCTTAA 972 49.38 MVFSSMPAYLDPSNWQQQTINQVGSSYRPSSQLLPPQPPPPPPLQHTHGGAMSGSVRPGSMSERARMANVPLPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPINSDHRSGDPDSSNMISSSSGRTDILSLGPQIPHLRFMAPLHNLNEFASGEIGLNYGLNYSTISAPMSGAGDLNFQQEVTLGGGGGGAGSLLGLDQQWRIQQMPQFPFLPGFDPSTALFERPPSLGINHLPSVKMEETQQDQGFNLGRQFLGSVAGNEQFWSGNNAWSDLSGFSSSSTTSNPP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19894303 19895452 - Bpe016048.1 Bpe04g01330 103139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01330 323 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Bpe04g01330 323 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Bpe04g01330 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 7 319 - -
Bpe04g01330 323 MobiDBLite consensus disorder prediction 135 163 - -
Bpe04g01330 323 MobiDBLite consensus disorder prediction 24 64 - -
Bpe04g01330 323 MobiDBLite consensus disorder prediction 121 163 - -
Bpe04g01330 323 MobiDBLite consensus disorder prediction 32 46 - -
Bpe04g01330 323 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Bpe04g01330 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 319 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00845 Bpe04g01330 CCT
Bpe02g00845 Bpe04g01330 ECH
Bpe03g01040 Bpe04g01330 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00845 Bpe-Chr2:6257405 Bpe04g01330 Bpe-Chr4:19894303 7.91E-68 dispersed
Bpe04g01330 Bpe-Chr4:19894303 Bpe15g01111 Bpe-Chr15:20233028 1.51E-87 dispersed
Bpe03g01040 Bpe-Chr3:29734000 Bpe04g01330 Bpe-Chr4:19894303 4.34E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21328 PF02701 zf-Dof 3.10E-32 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01330 - - qsu:112030762 336.65