Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01365 ATGCTGCTGGCGGCATCTCCTGTGACCCCATGTGGGGCATGCAAATTCTTGAGGAGAAAGTGCATTAACGGCTGCATTTTTGCACCCTACTTTAGCTCAGACCAAGGCTCGGCCAGGTTCGCCGCCGTCCATAAAGTGTTCGGCGCCAGCAATGTTTCGAAGCTTCTGCTTCATATTCCGGTGAGCCGGCGGCACGATGCCGTCGTTACTATCTCTTACGAGGCTCAGGCGAGACTTTCCGATCCCGTTTATGGCTGCGTTTCTACCATACTCGCTTTACAACAGCAGGTCGCAGCACTTCGGGCGGAGCTAGCCATGGTTCAAACGCATCTGATAAACAGCAGAATCGCCTTGGCAACGGCCGTCCAGAGCTCCCATGCACAGCAACAGCAGAATAACATCGAGGATATGATTAACAACGTTCAACTTCCCGCTTACTCAAACAACAACTCCTGTGCTTCCACCAATTTAATCAACAATCTGGCCGCCTTCACCTCCCCGCCGTTCGACCTTCCGGTGGAGGACCATACGACTCCGTTGTCTTCTCACAGCTGCTTAGACCCTCTGCAACTTTCTCAGCCCAATTCCCACGAGGATCAGGAGGATGACGAGGAAGAGATTAGATTTCCCACCCTCCATTTTAACCTATGA 651 52.38 MLLAASPVTPCGACKFLRRKCINGCIFAPYFSSDQGSARFAAVHKVFGASNVSKLLLHIPVSRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAALRAELAMVQTHLINSRIALATAVQSSHAQQQQNNIEDMINNVQLPAYSNNNSCASTNLINNLAAFTSPPFDLPVEDHTTPLSSHSCLDPLQLSQPNSHEDQEDDEEEIRFPTLHFNL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20273610 20274363 - Bpe016082.1 Bpe04g01365 103174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01365 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 6 205 - -
Bpe04g01365 216 MobiDBLite consensus disorder prediction 174 206 - -
Bpe04g01365 216 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Bpe04g01365 216 MobiDBLite consensus disorder prediction 177 195 - -
Bpe04g01365 216 Coils Coil 90 110 - -
Bpe04g01365 216 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
Bpe04g01365 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01365 Bpe-Chr4:20273610 Bpe05g00911 Bpe-Chr5:22121456 2.04E-53 dispersed
Bpe04g01365 Bpe-Chr4:20273610 Bpe09g00325 Bpe-Chr9:2947529 1.67E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21333 PF03195 LOB 1.70E-37 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01365 - - vri:117921175 258.455