Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01376 ATGCCTTTAAAGACTAAGAAGTCTTCAAAAGCACAATTCAGATTATCCATCTCGGACCAGATTCAATCTCCCCAGCCATCCCATTTGAACCCAACTACAAATCCGGAATTTGAAGATGAGGATTTGGTGTCTTATCTTGAAGAGGCTTCTAGTAGATTTCCTTCATTGATCGGAAAGTCAGCATTCATAGGCCGGGTGATGAATGTGGAAGCTGACTTGAAAGGCTGTAAGATTTGGCTCTCAGAATCTTCCATGGTTGCTTCTTCTCTTGTTCCCGGGGCTATCGTTTCGGTTGCAAAATTTTCAAATGGATTTCCTCTTTCATCATTAGGAGATGAAAGGGTTAGATCTTTTGAGGTTGATACTCCAGATAGTTTGGCTAATGAACCGGGAAACTACTTTGCACTTGCGACCATTCATCCTTCTGTTAAGGTTTTGAAGGATGGAGTGCGATTGTCTTCGAACCTTTCACATACCTTGGGATGCCCAGCATCTGGGAGGAATTTGTTTGTATACCCTGTACGAAATCAATCAAACGCTGGTATGGTAACTGGGTGGAAGAAACAAAATGTCAACGGGGTTGACTTTTTTCGAATATACAACTGCAAGGAATTGTATCTAGAGTTTGTTTCTTCTGATAGTAGACAAACGTTGAACAGTAACATGTTGTCTTCCATTGACTTTCATCTTGAAAAATCTTATGGTGAAAATGAAAATGAAAAAGTTGCATCACCTAAGACTCCATTGCATCAGTCGAAGCTTAGCTCTCCTAGTACTAGAAAATTAATTTCACCAGTAAGTGAAGATTCAGCATTTAGTACATCAAATTTGAAAATTTCATCTTTCGATACATCTCGTATTAAGGAGATACTAGAGGATAAGACTGCCAAAAAGATTTTGGAAACCTGCGCTACCTCATGGTTACATTCTCGTTGTTTACTTCGAGGAAATCTTGTAACCATACCGGTGCTTTCAGAGCTTTGTACTTTTTGTGTTGTTGGTGCCACAGAGTTATCAGATAATGCCAATTGCAATATAAATGACAAAAGTCATAACTATATGCATGAAGCTCTGGAGTTACAGGAGCCTGGAAATTATGCTTTGACTATAAGTACTCAAACAAGAGTATTATTCCACGACTCGTCATCAACTAGTGGGCCTACATTGATGCCAAATGGAATTTCAACTATTGTCGACCTTGAAAGTAAAGATCTTAAAGTCAAAGGGAAAATTTCAAAATTAGGTGGACTTTCTAAAGAATATTCAGTTTTAAAAAATATCATAGATGAGGCATTTGCAAACACACTGTCTAGTTTTGGTTTCCGAACTACAAAGGGAGCATTGCTTCATGGTCCACCTGGCACGGGAAAGACTTCTCTTGCTAGATTATGTGCTTATGATGCTGGTGTCAATTTTTTCTCTTTGAATGGACCTGAAATTATCAGTCAATATTATGGAGGAAGTGAACAAGCACTAAATGAGGTTTTTGAATTTGCCATGCGAGCTGCACCTTCTGTGGTGTTTATTGACGAGTTAGATGCTATTGCGCCTGCAAGAAATGGAGTTGAAGCTCTATCTCAAAGAATAGTTGCTACATTATTGAATTTGATGGACGGGATTGGCAAAACTGATGGAGTTATTGTGATTGCTGCTACTAGCAGGCCGGATACTATTGAGCCTGCACTCAGACGACCTGGCAGATTTGACATAGAAATTGAAATAGGAGTGCCATCCCCCGAGCAAAGATTGGATATATTGCTTGCTCTTCTCAGTGAAAGGCAACATTCACTTCTTGACTCACAAGTTCGACATCTTGCTGTGGTTACACACGGCTTTGTTGGTGCTGATCTGGCTGCCCTTTGCAATGAGGCAGCTATGGTTTGCCTGATGCGCTTTGATAAAGAAAGATGTGTATTAAAAGTGACTTTTGAAGACTTTGAGGAGGCCAGAATGAAAGTGAGACCAAGCGCCATGCGAGAGGTCATAATTGAGGTTCCAAAAGTTAAATGGGAAGATGTGGGTGGCCAAAGGGAGGTCAAGAGACAACTGTTGGAAGCAGTAGAATGGCCACAAAAACATCAAGATGCAATTGAACGCATTGGTACTCAACCTCTAACAGGAGTCTTGTTATATGGCCCTCCTGGTTGCAGCAAAACTCTGATGGCACGAGCTGTAGCTTCTGAAGCGGGGCTGAATTTCCTTGCCGTGAAGGGTCCAGAGCTTTTCAGCAAGTGGGTTGGTGAGTCTGAGAAAGCTGTAAAATCCCTGTTTGCGAAAGCTCAGGCAAATGCACCTTCAATCATATTTTTCGATGAAATAGATAGTTTAGCCAGCATTCGTGGAGAGGAAAGTGCTTCAGTTTCCAATAGAGTTATCAGTCAACTTCTTGTTGAAATGGACGGTTTGCACCAGAGAGTTAATGTTACTGTGATTGCTGCTACAAATCGGCTGGATAAAATTGATTCAGCTCTTTTAAGACCAGGACGCTTTGACCTGTTGTTGTATGTTGGGCTTCCAAATAAAATTGATCGAGAAGAGATATTCCGCATTCATTTGCGCAAAATTCCTTGCAGCGCTGATGTCAATGTAGGAGAGCTTGCTGATCTCACCGAAGGATGCACTGGGGCTGACATATCATTCATCTGCCAGGAAGCAGTCATTGCTGCCATAGAGGAGAGCCTGGAGCTTTCAGAAATAACAATGCAACAGTTGAAGACTGCAATTGAACTCGTAAAGCCATCAGAAACTGATCCCTACCTAGAATTGTCAAACAAGTTTCAAAAGACTGTCATCTCTAGTAATGTGATACAAAGTCAGACCTCTTATGAAGTCGCAGCTCTTTCTTTCTGGTGA 2853 41.08 MPLKTKKSSKAQFRLSISDQIQSPQPSHLNPTTNPEFEDEDLVSYLEEASSRFPSLIGKSAFIGRVMNVEADLKGCKIWLSESSMVASSLVPGAIVSVAKFSNGFPLSSLGDERVRSFEVDTPDSLANEPGNYFALATIHPSVKVLKDGVRLSSNLSHTLGCPASGRNLFVYPVRNQSNAGMVTGWKKQNVNGVDFFRIYNCKELYLEFVSSDSRQTLNSNMLSSIDFHLEKSYGENENEKVASPKTPLHQSKLSSPSTRKLISPVSEDSAFSTSNLKISSFDTSRIKEILEDKTAKKILETCATSWLHSRCLLRGNLVTIPVLSELCTFCVVGATELSDNANCNINDKSHNYMHEALELQEPGNYALTISTQTRVLFHDSSSTSGPTLMPNGISTIVDLESKDLKVKGKISKLGGLSKEYSVLKNIIDEAFANTLSSFGFRTTKGALLHGPPGTGKTSLARLCAYDAGVNFFSLNGPEIISQYYGGSEQALNEVFEFAMRAAPSVVFIDELDAIAPARNGVEALSQRIVATLLNLMDGIGKTDGVIVIAATSRPDTIEPALRRPGRFDIEIEIGVPSPEQRLDILLALLSERQHSLLDSQVRHLAVVTHGFVGADLAALCNEAAMVCLMRFDKERCVLKVTFEDFEEARMKVRPSAMREVIIEVPKVKWEDVGGQREVKRQLLEAVEWPQKHQDAIERIGTQPLTGVLLYGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKAQANAPSIIFFDEIDSLASIRGEESASVSNRVISQLLVEMDGLHQRVNVTVIAATNRLDKIDSALLRPGRFDLLLYVGLPNKIDREEIFRIHLRKIPCSADVNVGELADLTEGCTGADISFICQEAVIAAIEESLELSEITMQQLKTAIELVKPSETDPYLELSNKFQKTVISSNVIQSQTSYEVAALSFW 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20400161 20406753 - Bpe016094.1 Bpe04g01376 103185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01376 950 CDD AAA 674 838 - -
Bpe04g01376 950 Pfam ATPase family associated with various cellular activities (AAA) 448 575 IPR003959 GO:0005524|GO:0016887
Bpe04g01376 950 Pfam ATPase family associated with various cellular activities (AAA) 708 837 IPR003959 GO:0005524|GO:0016887
Bpe04g01376 950 Gene3D - 839 906 - -
Bpe04g01376 950 MobiDBLite consensus disorder prediction 237 260 - -
Bpe04g01376 950 Gene3D - 578 653 - -
Bpe04g01376 950 Coils Coil 887 907 - -
Bpe04g01376 950 CDD AAA 445 575 - -
Bpe04g01376 950 PANTHER AAA-FAMILY ATPASE 41 632 - -
Bpe04g01376 950 PANTHER - 634 935 - -
Bpe04g01376 950 PANTHER - 41 632 - -
Bpe04g01376 950 Gene3D - 396 577 IPR027417 -
Bpe04g01376 950 ProSitePatterns AAA-protein family signature. 808 826 IPR003960 GO:0005524|GO:0016887
Bpe04g01376 950 Gene3D - 665 838 IPR027417 -
Bpe04g01376 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 924 IPR027417 -
Bpe04g01376 950 SMART AAA_5 704 840 IPR003593 -
Bpe04g01376 950 SMART AAA_5 443 578 IPR003593 -
Bpe04g01376 950 MobiDBLite consensus disorder prediction 244 260 - -
Bpe04g01376 950 PANTHER AAA-FAMILY ATPASE 634 935 - -
Bpe04g01376 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 659 IPR027417 -
Bpe04g01376 950 Pfam AAA+ lid domain 603 648 IPR041569 -
Bpe04g01376 950 Pfam AAA+ lid domain 860 905 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00206 Bpe-Chr1:1256816 Bpe04g01376 Bpe-Chr4:20400161 2.57E-59 dispersed
Bpe04g00687 Bpe-Chr4:4402373 Bpe04g01376 Bpe-Chr4:20400161 6.66E-59 dispersed
Bpe04g01376 Bpe-Chr4:20400161 Bpe08g00168 Bpe-Chr8:932332 8.25E-59 dispersed
Bpe13g00231 Bpe-Chr13:10321515 Bpe04g01376 Bpe-Chr4:20400161 1.35E-10 dispersed
Bpe04g01376 Bpe-Chr4:20400161 Bpe02g00783 Bpe-Chr2:5647615 4.96E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01376 - - pmum:103327899 963.37