Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01386 TGTTTTTCTGTTATGGGTCTTGTTGCTGAATCTCAGTTTCATGTTTTGGCCGTTGATGATAGTCTTATTGATCGAAAACTGATAGAGAGGCTGCTCAAGACCTCGTCGTATCAAGCAGTCACTACTGTTGATTCTGGTTCTAAAGCTTTGGAATTTCTGGGTTTTAATCAAGATGAAAAAACCAACGCCACTATTCCTTCGATTTCTCCGATTAAGGAAGTGGAAGTGAATCTTATCATCACAGATTATTGTATGCCCGGAATGACAGGCTTTGATTTGCTCAAGAAAATCAAGGAGTGTTCATCCTTGAGAAACATACCAGTAGTGATAATGTCGTCGGAGAATGTACCTTCGAGAATCACCAGATGCTTGGAGGAAGGAGCAGAAGAGTTTTTCTTGAAACCAGTTCGACTTTCAGACATGAACAGGCTGAAACCCCACATGATGAAAACCAGATCGAAGGATCAAGAACGTGAAAATGGCGATGGATCAGAGAAGAACTGTCAATTTCTAGAACAAAAACAGGCGAGTAATAAGAGGAAAGCCATGGAAGAAGGTCTTTCCCCTGAAAGAACACGACCCAGATACAGTGGCGTTGCCACTGTGATCTGA 612 41.83 CFSVMGLVAESQFHVLAVDDSLIDRKLIERLLKTSSYQAVTTVDSGSKALEFLGFNQDEKTNATIPSISPIKEVEVNLIITDYCMPGMTGFDLLKKIKECSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVRLSDMNRLKPHMMKTRSKDQERENGDGSEKNCQFLEQKQASNKRKAMEEGLSPERTRPRYSGVATVI 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20525238 20526259 + Bpe016104.1 Bpe04g01386 103195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01386 203 MobiDBLite consensus disorder prediction 177 191 - -
Bpe04g01386 203 ProSiteProfiles Response regulatory domain profile. 14 149 IPR001789 GO:0000160
Bpe04g01386 203 Pfam Response regulator receiver domain 15 141 IPR001789 GO:0000160
Bpe04g01386 203 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9 8 195 - -
Bpe04g01386 203 MobiDBLite consensus disorder prediction 145 165 - -
Bpe04g01386 203 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 195 IPR045279 GO:0009736
Bpe04g01386 203 SMART REC_2 13 148 IPR001789 GO:0000160
Bpe04g01386 203 CDD REC_typeA_ARR 15 144 - -
Bpe04g01386 203 Gene3D - 14 197 - -
Bpe04g01386 203 SUPERFAMILY CheY-like 12 147 IPR011006 -
Bpe04g01386 203 MobiDBLite consensus disorder prediction 145 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01386 K14492 ARR-A; two-component response regulator ARR-A family - tcc:18598779 291.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01386 Bpe04g00591 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01386 Bpe-Chr4:20525238 Bpe04g01964 Bpe-Chr4:24500677 6.62E-64 dispersed
Bpe02g00640 Bpe-Chr2:4187599 Bpe04g01386 Bpe-Chr4:20525238 6.78E-61 transposed
Bpe04g00591 Bpe-Chr4:3762637 Bpe04g01386 Bpe-Chr4:20525238 2.51E-58 transposed
Bpe06g00339 Bpe-Chr6:14828751 Bpe04g01386 Bpe-Chr4:20525238 9.52E-10 transposed
Bpe08g00899 Bpe-Chr8:11365054 Bpe04g01386 Bpe-Chr4:20525238 8.79E-16 transposed
Bpe03g01093 Bpe-Chr3:30097327 Bpe04g01386 Bpe-Chr4:20525238 8.89E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1179 . . . Bda03g00627 Bpe04g01386 . Bma04g01468 Bma10g00231 . . Cma03g00130 Cma07g01364 Car03g00131 Car07g01312 Sed14g0018 . . Bhi03g02471 Tan03g0466 Cmetu08g0497 . Hepe04g0485 . . Cla04g00444 Cam04g0440 Cec04g0555 Cco04g0576 Clacu04g0453 Cmu04g0488 Cre04g0540 Cone3ag0023 . Cone13ag0617 Cone19ag0548 Lsi01g01790 Csa04g01951 . Cme04g02093 . . . . Bpe04g00591 . . . Sed02g0819 Cmo03g00167 Cmo07g01403 . . . Car14g00475 Cpe03g00456 . Bhi11g02832 Tan08g1252 Cmetu04g1441 . Hepe05g0710 . . Cla10g01535 Cam10g1583 Cec10g1628 Cco10g1598 Clacu10g1595 Cmu10g2355 Cre10g1736 Lsi03g01597 Csa03g03727 . Cme08g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe10g00821 CCT,ECH 1 164 Response Regulator Gene Family AT1G59940 66.7 5.9e-55 211.5
Bpe11g01741 CCT,ECH 1 163 Response Regulator Gene Family AT1G59940 65.9 5.9e-55 211.5
Bpe13g00265 CCT,ECH 1 150 Response Regulator Gene Family AT1G59940 67.5 1.7e-49 193.4
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G59940 69.3 2.7e-47 186.0
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G59940 59.0 1.3e-38 157.1
Bpe04g01964 . 8 149 Response Regulator Gene Family AT1G59940 60.6 1.3e-38 157.1
Bpe15g00976 . 10 170 Response Regulator Gene Family AT1G59940 53.7 1.2e-36 150.6
Bpe10g00821 CCT,ECH 19 216 Response Regulator Gene Family AT1G10470 61.1 2.9e-54 208.8
Bpe11g01741 CCT,ECH 19 193 Response Regulator Gene Family AT1G10470 63.6 1.1e-53 206.8
Bpe13g00265 CCT,ECH 15 147 Response Regulator Gene Family AT1G10470 74.6 2.2e-49 192.6
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G10470 70.8 1.2e-47 186.8
Bpe04g01386 CCT 14 162 Response Regulator Gene Family AT1G10470 59.1 4.5e-39 158.3
Bpe15g00976 . 10 157 Response Regulator Gene Family AT1G10470 56.1 1.2e-36 150.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe13g00265 CCT,ECH 16 148 Response Regulator Gene Family AT5G62920 80.6 1.1e-53 206.5
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT5G62920 79.1 1.0e-51 199.9
Bpe10g00821 CCT,ECH 23 159 Response Regulator Gene Family AT5G62920 72.3 9.0e-48 186.8
Bpe11g01741 CCT,ECH 30 160 Response Regulator Gene Family AT5G62920 71.0 3.4e-47 184.9
Bpe04g01386 CCT 14 150 Response Regulator Gene Family AT5G62920 59.9 5.9e-39 157.5
Bpe04g01964 . 10 152 Response Regulator Gene Family AT5G62920 53.8 1.9e-37 152.5
Bpe13g00265 CCT,ECH 5 151 Response Regulator Gene Family AT1G19050 71.8 3.9e-52 201.4
Bpe15g00623 CCT,ECH 12 140 Response Regulator Gene Family AT1G19050 75.4 1.8e-49 192.6
Bpe10g00821 CCT,ECH 31 204 Response Regulator Gene Family AT1G19050 58.9 3.0e-44 175.3
Bpe11g01741 CCT,ECH 31 191 Response Regulator Gene Family AT1G19050 56.5 2.2e-42 169.1
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT2G41310 57.1 1.5e-57 219.5
Bpe04g01964 . 1 151 Response Regulator Gene Family AT2G41310 60.8 2.3e-45 179.1
Bpe10g00821 CCT,ECH 26 170 Response Regulator Gene Family AT2G41310 56.6 2.2e-40 162.5
Bpe11g01741 CCT,ECH 33 166 Response Regulator Gene Family AT2G41310 57.4 2.9e-40 162.2
Bpe15g00976 . 3 161 Response Regulator Gene Family AT2G41310 54.7 4.9e-40 161.4
Bpe02g00640 . 16 167 Response Regulator Gene Family AT2G41310 54.2 1.4e-39 159.8
Bpe13g00265 CCT,ECH 19 147 Response Regulator Gene Family AT2G41310 60.1 1.9e-39 159.5
Bpe15g00623 CCT,ECH 8 148 Response Regulator Gene Family AT2G41310 55.3 7.1e-39 157.5
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT3G57040 58.3 3.3e-63 238.4
Bpe04g01964 . 1 176 Response Regulator Gene Family AT3G57040 54.0 7.9e-49 190.7
Bpe15g00976 . 3 161 Response Regulator Gene Family AT3G57040 57.3 1.1e-42 170.2
Bpe11g01741 CCT,ECH 31 167 Response Regulator Gene Family AT3G57040 57.5 1.9e-42 169.5
Bpe10g00821 CCT,ECH 26 161 Response Regulator Gene Family AT3G57040 59.3 5.5e-42 167.9
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT3G57040 61.8 1.0e-40 163.7
Bpe15g00623 CCT,ECH 12 150 Response Regulator Gene Family AT3G57040 57.6 1.3e-40 163.3
Bpe02g00640 . 16 167 Response Regulator Gene Family AT3G57040 54.2 5.1e-40 161.4
Bpe13g00265 CCT,ECH 21 158 Response Regulator Gene Family AT1G74890 72.7 1.5e-51 199.5
Bpe15g00623 CCT,ECH 10 161 Response Regulator Gene Family AT1G74890 66.2 8.2e-50 193.7
Bpe10g00821 CCT,ECH 27 218 Response Regulator Gene Family AT1G74890 55.2 2.5e-46 182.2
Bpe11g01741 CCT,ECH 25 164 Response Regulator Gene Family AT1G74890 65.7 2.7e-45 178.7
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G74890 59.0 3.8e-39 158.3
Bpe04g01964 . 4 154 Response Regulator Gene Family AT1G74890 52.3 1.1e-38 156.8
Bpe11g01741 CCT,ECH 30 157 Response Regulator Gene Family AT2G40670 61.1 3.6e-40 161.4
Bpe10g00821 CCT,ECH 30 161 Response Regulator Gene Family AT2G40670 62.2 6.2e-40 160.6
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT2G40670 51.8 2.6e-38 155.2
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT2G40670 61.8 7.5e-38 153.7
Bpe15g00623 CCT,ECH 12 144 Response Regulator Gene Family AT2G40670 58.3 2.2e-37 152.1
Bpe10g00821 CCT,ECH 22 161 Response Regulator Gene Family AT3G56380 61.0 8.0e-42 166.8
Bpe11g01741 CCT,ECH 16 157 Response Regulator Gene Family AT3G56380 56.4 8.9e-41 163.3
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT3G56380 54.5 9.8e-40 159.8
Bpe13g00265 CCT,ECH 16 147 Response Regulator Gene Family AT3G56380 59.7 2.9e-39 158.3
Bpe15g00623 CCT,ECH 12 143 Response Regulator Gene Family AT3G56380 58.5 3.2e-38 154.8
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe15g01310 . 20 271 Response Regulator Gene Family AT5G60100 56.6 1.5e-63 240.4
Bpe04g00712 . 65 216 Response Regulator Gene Family AT5G60100 69.1 5.4e-53 205.3
Bpe05g01054 CCT,ECH 21 154 Response Regulator Gene Family AT5G60100 61.9 1.0e-43 174.5
Bpe15g01310 . 65 197 Response Regulator Gene Family AT5G24470 59.4 3.8e-41 166.4
Bpe04g00712 . 74 218 Response Regulator Gene Family AT5G24470 53.8 2.3e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21335 PF00072 Response_reg 5.40E-20 CL0304 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01386 Bpe_Chr04 FPKM 2.895623 4.324353 5.046267 6.113853 21.79134 18.757036 20.555565 6.262408 5.477805 5.049893