Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01404 ATGGTCGACTACGCCATGGATATCCACAAGTCGCTTTACCACTCCGAAGAAGTGCCACATGATATGGTGGAGAGGAGAGCTGAGGTGGTTGCGAGGCTCAATGCTTTGGAAGAAGGTGCGGCGCCTATCGTCGCTTTTCTTCAGAATGCCTCTGCGGTTCTGGAGTTGAGGGGAGATAAGCATTATAATCTCCAAATGCTTAATGAACGCTATCAGATTGGTCCAAACCAGATAGAGGCATTGTATCAATATGCCAAGTTTCAGTTTGAGTGTGGAAACTACTCTGGAGCTGCAGATTATTTGTCTCAGTACAGGGCTTTATCCACGAACAGCGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCTGCAGAGATTCTGATGCAGAATTGGGATATTGCTTTGAAAGAACTTAATCGTTTGAAAGAAATTATTGACTCAAAGTCTTTTTTTCGGCAGAGTTTTTCATCACCTATGAGTCAGGTGCAAAGCAGAATATGGCTAATGCACTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAATAACAGAGATTATTGACCTATTTAGTCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCTCATTTGCTACGCTACTTGGCGACTGCATTCATTGTGATATTGAATGATCCTTTTCTTGGCAAACGAGTTGAAAATGGAAACTATTCAACTGTGCCATTGAGAGATGAATTTCTAGAGAATGCACGTTTATTCATCTTTGAGACCTATTGCCAAATACATCGGCGTATAGAAATGAGTGTTCTTGCTGAGAAGTTAAACTTGAGTTATGAGGATGCTGAAAGATGGATTGCGAATCTTATCCGAGGCTCAAAGCTGGATGCTAGGGTTGATTCAAAGTCAGGAACTGTCATCATGGAACCCAACCATCCAAATGTGTATGAGCAGTTGATAGACCACACCAAGGCATTATCTGGACGCACTTACAAGTTGGTCAATCAGCTCCTAGAGCACACCCAATCTCAGGCAGCTCGGTAA 1026 42.2 MVDYAMDIHKSLYHSEEVPHDMVERRAEVVARLNALEEGAAPIVAFLQNASAVLELRGDKHYNLQMLNERYQIGPNQIEALYQYAKFQFECGNYSGAADYLSQYRALSTNSERSLSALWGKLAAEILMQNWDIALKELNRLKEIIDSKSFFRQSFSSPMSQVQSRIWLMHWSLFIFFNHDNGITEIIDLFSQDKYLNAIQTNAPHLLRYLATAFIVILNDPFLGKRVENGNYSTVPLRDEFLENARLFIFETYCQIHRRIEMSVLAEKLNLSYEDAERWIANLIRGSKLDARVDSKSGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVNQLLEHTQSQAAR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20714085 20717106 - Bpe016124.1 Bpe04g01404 103213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01404 341 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 236 320 - -
Bpe04g01404 341 SMART eIF3_N_2 1 88 IPR019010 -
Bpe04g01404 341 Pfam eIF3 subunit 6 N terminal domain 1 88 IPR019010 -
Bpe04g01404 341 SUPERFAMILY Winged helix DNA-binding domain 236 307 IPR036390 -
Bpe04g01404 341 Pfam PCI domain 231 303 IPR000717 -
Bpe04g01404 341 SMART PINT_4 236 320 IPR000717 -
Bpe04g01404 341 PIRSF Transl_init_eIF3e 1 220 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe04g01404 341 PIRSF Transl_init_eIF3e 215 341 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe04g01404 341 SUPERFAMILY TPR-like 57 132 IPR011990 GO:0005515
Bpe04g01404 341 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 1 333 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe04g01404 341 Gene3D - 231 336 - -
Bpe04g01404 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 216 - -
Bpe04g01404 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 216 339 - -
Bpe04g01404 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 216 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe04g01404 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 216 339 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe04g01404 341 ProSiteProfiles PCI domain profile. 143 307 IPR000717 -
Bpe04g01404 341 Gene3D Tetratricopeptide repeat domain 21 215 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01404 Bpe-Chr4:20714085 Bpe13g01044 Bpe-Chr13:16116035 1.39E-118 dispersed
Bpe03g01106 Bpe-Chr3:30185760 Bpe04g01404 Bpe-Chr4:20714085 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01404 K03250 - rcu:8268657 577.4