Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01423 ATGGGGTTTCTGTCTGTGCTGAGTATTTTCCTTCTTGGGATTCTGTTTAAGTCTCAGCCTGTAAGTTCTCAGTTTGACGATCAAGCGATATTGGTAGCGATTAACGAAGAGCTTCGAGTTCCTGGATGGGGTTTGAACGGCTCAGATTACTGTTCTTGGCCTGGCATTGGTTGCAGCTTAAACCATTCGAGAGTGGCAAAGCTCGATCTCTCTCGTTTCCAGCTTAGAGGTAATTTGAGTCTACTCTCTGAGCTTAAAGCTTTGACGTGGCTCGACCTTTCCTTTAACAACTTCCATGGTGAAATTCCTTCAGTTTTTGGAAATTTATCTGAGCTTGAGTTTCTTGATTTATCTTTGAATGCGTTTGAAGGGTCAATTCCACTAGAATTGGGGGGTCTTATAAAGCTTACATCACTGAACCTTTCTAATAACTTCCTTGTTGGGGAAATACCCGATGAGCTTCAAGGCCTAGAAAATTTGCAAGACTTTCAAATTTCTAGTAATACATTGAATGGTACAATCCCGAATTGGGTTGGGAATTTGACGAAATTGAGAGCTTTTTCTGCCTATGAGAATGAATTTGGTGGTATAATTCCAGATAATCTAGGCTTAGCTTCTGAGCTTCATTTGCTGAATCTTCACTCAAATAAGCTAGAAGGGCCTATACCTCGAAGCATTTTCTCTTCAGGGACGCTAGAAGTATTAATTTTGACCCAAAACAAGTTAAATGGTTATCTTCCTGAAGAAATTGGAAGCTGCAAAAGCTTATCGAATCTTCGAATTGGGAATAATGATCTTGTCGGAGGCATTCCCAAGGAAATTGGAAATATTAGTAGCCTGACTTACTTTGAAGTTGACAATAACAACCTCTCCGGCCATATTGTCGCCGAGTTTGCCAACTGCTCTAACCTTACTCTTCTGAATTTAGCATCGAATGGCTTTACTGGAGTTGTTCCTTCTGAACTTGGGCAGCTAATGAACTTGCAAGAGCTGATTCTTTCAAACAACAGTCTTTTTGGAGATATTCCAGTTTCAATCCTCGGATGCAAGAATCTGAATAAGCTCGATTTAAGCAATAATCGATTTAATGGATCGATTCCGACCGAAATCTGCAACTTACCCAGATTACAGTACTTGCTTTTGGATCAGAATTCGATTAAAGGAGAGATACCCAGCGAAATTGGAAATTGTACAAAGCTTCTTGAGCTGCAATTGGGTAGCAACTACTTGACTGGGAGTATTCCTTCTGAGATTGGTCATATCAAGAATTTGCAGATTGCTTTGAACTTAAGTTTTAATCATCTTCATGGACCCCTGCCATTGGAGCTAGGAAAACTAGACAAGCTGGTATCTCTAGATGTCTCTAATAATCATTTTTCTGGAGATATTCCGGTGGCACTCAAGGGGATGATGAGTTTGATTGAGGTTAATTTCTCAAACAATCTGTTTAATGGTCCAATACCCATCTTTGTGCCATTCCAAAAGAGCTCAAATTCAAGCTTTTTGGGGAATAAAGGACTCTGTGGAGAGCCATTAGTCATTACATGCGGAAGTTTGAGCAGTTCCGAGCATTCAAATTACCGACATAAAGTTTCCTACCGGATTATATTAGCAGTCATTGGCTCTGGTTTAGCGGTTTTTGTGTCAGTAACTGTAGTTGTTCTGCTGTTTATGATGAGGGAAAAACAAGAAAAAGCAACCAAAACTTCCGAAACGGCCAATGAAGAAACTACTAGTAATCAACCCCCCACGATAATTGCAGGCAACGTCTTTGTGGAGAATCTCAGACAGGCAATCGATCTTGAAGCAGTTGTTAAAGCCAGCATGAAAAATTCAAATAAGCTCCATCTAGGAACTTTTAGCACAGTTTATAAAGCTGTTATGCCTTCTGGAATGATTATTTCAGTGAAGAGACTGAGATCAATGGATAGAACAATCATCAATCACCAGACGAAGATGATCCGAGAGCTTGAACGGCTGAGCAAGCTTTGCCATGATAACTTAGTTCGACCAATTGGATTCGTTATATACGAAGATGTTGCTCTTTTGCTGCATCATTACTTATCGAATGGGACATTAGCTCAGCTTCTTCATGTCTCATTGAAGCAACCCGAGTATGAACCAGATTGGCCGACTAGACTTTCCATTGCCGTCGGAGTAGCTGAAGGATTAGCCTTTCTCCATAGTGTGGCTATAATCCATCTTGATATTTCCTCAGGCAATGTTCTTTTAGATGCAAATTTCACTCCTTTGGTCGGAGAAATCGAAATATCAAAACTCTTGGACCCGTCCCGAGGCACTGCAAGTATTAGTGCAGTTGCTGGATCCTTTGGCTACATTCCACCAGAATATGCATATACCATGCAAGTTACAGCTCCCGGAAATGTTTACAGCTATGGTGTAGTCTTGCTGGAAATCCTTACGAGTAGATTGCCGGCCGATGAGGAATTTGAAGAAGGTATTGATTTGGTGAAATGGGTCCATACCGCTCCAGCGAGAGGGGAAACCCCAGAGCAGATTCTTGATTCAAGACTAAGCACAGTTTCCTTTGCCTGGAGAAAAGAAATGCTTGCAGCACTGAAAGTGGCATTACTCTGCACTGACAACACTCCGGCGAAACGGCCTAAAATGAAGAAAGTAGTAGAAATGCTTCAGGAAATCCAGCAAAGCTGA 2673 41.19 MGFLSVLSIFLLGILFKSQPVSSQFDDQAILVAINEELRVPGWGLNGSDYCSWPGIGCSLNHSRVAKLDLSRFQLRGNLSLLSELKALTWLDLSFNNFHGEIPSVFGNLSELEFLDLSLNAFEGSIPLELGGLIKLTSLNLSNNFLVGEIPDELQGLENLQDFQISSNTLNGTIPNWVGNLTKLRAFSAYENEFGGIIPDNLGLASELHLLNLHSNKLEGPIPRSIFSSGTLEVLILTQNKLNGYLPEEIGSCKSLSNLRIGNNDLVGGIPKEIGNISSLTYFEVDNNNLSGHIVAEFANCSNLTLLNLASNGFTGVVPSELGQLMNLQELILSNNSLFGDIPVSILGCKNLNKLDLSNNRFNGSIPTEICNLPRLQYLLLDQNSIKGEIPSEIGNCTKLLELQLGSNYLTGSIPSEIGHIKNLQIALNLSFNHLHGPLPLELGKLDKLVSLDVSNNHFSGDIPVALKGMMSLIEVNFSNNLFNGPIPIFVPFQKSSNSSFLGNKGLCGEPLVITCGSLSSSEHSNYRHKVSYRIILAVIGSGLAVFVSVTVVVLLFMMREKQEKATKTSETANEETTSNQPPTIIAGNVFVENLRQAIDLEAVVKASMKNSNKLHLGTFSTVYKAVMPSGMIISVKRLRSMDRTIINHQTKMIRELERLSKLCHDNLVRPIGFVIYEDVALLLHHYLSNGTLAQLLHVSLKQPEYEPDWPTRLSIAVGVAEGLAFLHSVAIIHLDISSGNVLLDANFTPLVGEIEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTSRLPADEEFEEGIDLVKWVHTAPARGETPEQILDSRLSTVSFAWRKEMLAALKVALLCTDNTPAKRPKMKKVVEMLQEIQQS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20905984 20908768 + Bpe016142.1 Bpe04g01423 103232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01423 890 Gene3D Phosphorylase Kinase; domain 1 569 687 - -
Bpe04g01423 890 Gene3D Transferase(Phosphotransferase) domain 1 688 890 - -
Bpe04g01423 890 Gene3D Ribonuclease Inhibitor 26 168 IPR032675 -
Bpe04g01423 890 Pfam Protein tyrosine and serine/threonine kinase 611 884 IPR001245 GO:0004672|GO:0006468
Bpe04g01423 890 ProSitePatterns Tyrosine protein kinases specific active-site signature. 732 744 IPR008266 GO:0004672|GO:0006468
Bpe04g01423 890 SUPERFAMILY Protein kinase-like (PK-like) 608 885 IPR011009 -
Bpe04g01423 890 Gene3D Ribonuclease Inhibitor 169 272 IPR032675 -
Bpe04g01423 890 Gene3D Ribonuclease Inhibitor 276 518 IPR032675 -
Bpe04g01423 890 SMART LRR_typ_2 373 397 IPR003591 -
Bpe04g01423 890 SMART LRR_typ_2 446 469 IPR003591 -
Bpe04g01423 890 SMART LRR_typ_2 109 132 IPR003591 -
Bpe04g01423 890 SMART LRR_typ_2 325 349 IPR003591 -
Bpe04g01423 890 SMART LRR_typ_2 133 156 IPR003591 -
Bpe04g01423 890 SMART LRR_typ_2 85 108 IPR003591 -
Bpe04g01423 890 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 888 - -
Bpe04g01423 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 3 888 - -
Bpe04g01423 890 SUPERFAMILY RNI-like 67 387 - -
Bpe04g01423 890 SUPERFAMILY Outer arm dynein light chain 1 327 506 - -
Bpe04g01423 890 ProSiteProfiles Protein kinase domain profile. 609 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01423 890 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Bpe04g01423 890 Pfam Leucine rich repeat 87 144 IPR001611 GO:0005515
Bpe04g01423 890 CDD STKc_IRAK 615 887 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00181 Bpe-Chr2:1255871 Bpe04g01423 Bpe-Chr4:20905984 2.41E-29 dispersed
Bpe04g01423 Bpe-Chr4:20905984 Bpe05g01126 Bpe-Chr5:23594152 4.19E-161 dispersed
Bpe04g01423 Bpe-Chr4:20905984 Bpe04g01056 Bpe-Chr4:7837449 9.83E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63324 PF07714 PK_Tyr_Ser-Thr 1.00E-26 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01423 - - rcu:8260641 1385.55