Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01426 ATGGGAACTCCGGAATTCCCAGATCTTGGAAAGCATTGTAGCGTTGAAGATTGCAAACTGATTGATTTCTTGCCCTTCACCTGTGATCGCTGCCGCCAGGTTTTTTGTTTAGAGCATAGGAGCTACATTAAGCATAATTGTCCCAAAGCCGACAAAAAAGACGTCACTGTCGTCATTTGTCCGCTCTGTGCAAATGGAGTTCGTCTAATTCCCGACGAAGATCCGAACATTACATGGGACAGACACGTCAACTCTGAATGCGATCCATCAAATTACGAGAAAGCGACAAAGAAGAAAAAGTGCCCGGTTCCTGGCTGCAGGGAAACCTTAACATTCTCAAACACGATTAAGTGCAGGGATTGCTTGGTAGACCATTGTTTGAAGCACAGATTTGGACCCGACCATAAATGTCCTGGACCGAAGAAACCAGAAGCAAGTTTTCCATTTATTGGTCTTTTAAGTCGGAGTGTAAAAGAAGATCCGAAGCCTAACCGGGGACCTAAGACATCTTCTTCGCCTAAGTGGGCTACAAGCTTTCTCAATGCAGCCTCCACTGGTATAGGGAAAATAAGCGGGGAGATTAGCCAAGCTTGGCAGATTGCTCGAGATGGGGTTGGATCCAGCAGCTCAAATTTTGGTGGAAATAAACAGGAGGAATGCCCACAATGCCATGCAAGATTTTCTTCTTTGACGACTCTGGTAGAACACGTTGAAAAAGTGCACGAAAAGAGTAGAAAGGTTGTCGATGTCTGTCCAAAGTGTAGTCAGGGATTTCGGGATCCAGTTGCGCTTGTAGAACACGTCGAAAGAGATCACGGCGGAACTTCAAAGGCTTAG 837 45.76 MGTPEFPDLGKHCSVEDCKLIDFLPFTCDRCRQVFCLEHRSYIKHNCPKADKKDVTVVICPLCANGVRLIPDEDPNITWDRHVNSECDPSNYEKATKKKKCPVPGCRETLTFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKKPEASFPFIGLLSRSVKEDPKPNRGPKTSSSPKWATSFLNAASTGIGKISGEISQAWQIARDGVGSSSSNFGGNKQEECPQCHARFSSLTTLVEHVEKVHEKSRKVVDVCPKCSQGFRDPVALVEHVERDHGGTSKA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20922583 20924047 - Bpe016145.1 Bpe04g01426 103235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01426 278 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Bpe04g01426 278 Gene3D - 2 59 IPR035896 -
Bpe04g01426 278 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Bpe04g01426 278 SMART c2h2final6 99 129 IPR013087 -
Bpe04g01426 278 SMART c2h2final6 249 272 IPR013087 -
Bpe04g01426 278 SMART c2h2final6 218 241 IPR013087 -
Bpe04g01426 278 SUPERFAMILY AN1-like Zinc finger 93 145 IPR035896 -
Bpe04g01426 278 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 278 - -
Bpe04g01426 278 ProSitePatterns Zinc finger C2H2 type domain signature. 220 241 IPR013087 -
Bpe04g01426 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 246 IPR013087 -
Bpe04g01426 278 Gene3D - 81 147 IPR035896 -
Bpe04g01426 278 Gene3D Classic Zinc Finger 199 277 - -
Bpe04g01426 278 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 278 - -
Bpe04g01426 278 ProSitePatterns Zinc finger C2H2 type domain signature. 251 272 IPR013087 -
Bpe04g01426 278 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Bpe04g01426 278 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Bpe04g01426 278 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Bpe04g01426 278 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Bpe04g01426 278 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01426 Bpe-Chr4:20922583 Bpe14g00205 Bpe-Chr14:2312703 1.13E-34 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21338 PF01428 zf-AN1 1.60E-07 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01426 - - qsu:112027911 479.174