Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g01449 | ATGGCTCCTGGCGGTGGTGCTTACAAAGAAGTTCTACAATCCCATCCCTCGGTTTCGGATTATGACATAACAACGTCAAAATCAGAGATAAGTTCTTCGTTAACTAAGCTTTCGATCGGTCGACGTGAAATTTCCTCAACCAACGGAGTCCATGAGTTGCTCGAGTGCCCTGTCTGTCTGAGTTTGATGTACCCTCCAATTCATCAGTGCCCAAACGGCCACACGCTTTGTTCGAACTGTAAGATCCGAGTGCACAACTGCTGCCCAACTTGCCGAAACGAGCTTGGCGACATTAGGTGCTTGGCTTTGGAAAAGGTGGCCGAATCTTTGGAACTGCCATGCCAGTACCAAAGCTTAGGTTGTCACGATATTTTTCCGTACTACTCCAAGCTCAAGCACGAGCTAAATTGTAGGTTCCGGCCTTTCAATTGCTCCTATGCTGGCTCAGAGTGCTCCGTCACGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGATGGGTGTACCTTCAACCATCGATACGTCAAATCCAATCCTGACGAAGTTGAGAATGCCACTTGGATGCTTACGGTCTTCAATTGCTTTGGACGGCAATTCTGCTTGCATTTTGAGGCTTTCCTCTTAGGCTCAGCTCCGGTTTATATGGCCTTTTTACGGTTTATGGGGGACGATAACGATGCCAAAAAATTTAGGTACACGTTGGAAGTGGGCGGCTTCGGTAGAAAACTAATTTGGCAAGGAATTCCAAGGAGCATACGAGACGATCATGTGAAAGTACGCGATAGTGAGGATGGACTCATCATTCAGAAGAATCTCGCACTCTACTTCTCTGGCGGCGACCGGCAAGAACTGAAGTTAAGGGTCACCGGGCGAATTTGGAAAGAAGAATGA | 915 | 48.09 | MAPGGGAYKEVLQSHPSVSDYDITTSKSEISSSLTKLSIGRREISSTNGVHELLECPVCLSLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRNELGDIRCLALEKVAESLELPCQYQSLGCHDIFPYYSKLKHELNCRFRPFNCSYAGSECSVTGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGSAPVYMAFLRFMGDDNDAKKFRYTLEVGGFGRKLIWQGIPRSIRDDHVKVRDSEDGLIIQKNLALYFSGGDRQELKLRVTGRIWKEE | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21132475 | 21133953 | - | Bpe016168.1 | Bpe04g01449 | 103258 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g01449 | 304 | CDD | RING-HC_SIAHs | 54 | 92 | - | - | |
Bpe04g01449 | 304 | Pfam | Seven in absentia protein family | 98 | 297 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Bpe04g01449 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 92 | IPR001841 | - | |
Bpe04g01449 | 304 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 1 | 303 | - | - | |
Bpe04g01449 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 164 | 297 | IPR008974 | GO:0005515 | |
Bpe04g01449 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 163 | IPR013083 | - | |
Bpe04g01449 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 108 | IPR013083 | - | |
Bpe04g01449 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 303 | - | - | |
Bpe04g01449 | 304 | SUPERFAMILY | RING/U-box | 49 | 95 | - | - | |
Bpe04g01449 | 304 | SUPERFAMILY | TRAF domain-like | 109 | 301 | - | - | |
Bpe04g01449 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 109 | 169 | IPR013010 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe03g01154 | Bpe04g01449 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g01449 | Bpe-Chr4:21132475 | Bpe07g01014 | Bpe-Chr7:15768477 | 5.80E-161 | dispersed | |
Bpe03g01154 | Bpe-Chr3:30581124 | Bpe04g01449 | Bpe-Chr4:21132475 | 0 | wgd | |
Bpe04g01449 | Bpe-Chr4:21132475 | Bpe08g01243 | Bpe-Chr8:13946624 | 4.84E-152 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g01449 | K04506 | - | rcu:8260973 | 556.214 |