Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01449 ATGGCTCCTGGCGGTGGTGCTTACAAAGAAGTTCTACAATCCCATCCCTCGGTTTCGGATTATGACATAACAACGTCAAAATCAGAGATAAGTTCTTCGTTAACTAAGCTTTCGATCGGTCGACGTGAAATTTCCTCAACCAACGGAGTCCATGAGTTGCTCGAGTGCCCTGTCTGTCTGAGTTTGATGTACCCTCCAATTCATCAGTGCCCAAACGGCCACACGCTTTGTTCGAACTGTAAGATCCGAGTGCACAACTGCTGCCCAACTTGCCGAAACGAGCTTGGCGACATTAGGTGCTTGGCTTTGGAAAAGGTGGCCGAATCTTTGGAACTGCCATGCCAGTACCAAAGCTTAGGTTGTCACGATATTTTTCCGTACTACTCCAAGCTCAAGCACGAGCTAAATTGTAGGTTCCGGCCTTTCAATTGCTCCTATGCTGGCTCAGAGTGCTCCGTCACGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGATGGGTGTACCTTCAACCATCGATACGTCAAATCCAATCCTGACGAAGTTGAGAATGCCACTTGGATGCTTACGGTCTTCAATTGCTTTGGACGGCAATTCTGCTTGCATTTTGAGGCTTTCCTCTTAGGCTCAGCTCCGGTTTATATGGCCTTTTTACGGTTTATGGGGGACGATAACGATGCCAAAAAATTTAGGTACACGTTGGAAGTGGGCGGCTTCGGTAGAAAACTAATTTGGCAAGGAATTCCAAGGAGCATACGAGACGATCATGTGAAAGTACGCGATAGTGAGGATGGACTCATCATTCAGAAGAATCTCGCACTCTACTTCTCTGGCGGCGACCGGCAAGAACTGAAGTTAAGGGTCACCGGGCGAATTTGGAAAGAAGAATGA 915 48.09 MAPGGGAYKEVLQSHPSVSDYDITTSKSEISSSLTKLSIGRREISSTNGVHELLECPVCLSLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRNELGDIRCLALEKVAESLELPCQYQSLGCHDIFPYYSKLKHELNCRFRPFNCSYAGSECSVTGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGSAPVYMAFLRFMGDDNDAKKFRYTLEVGGFGRKLIWQGIPRSIRDDHVKVRDSEDGLIIQKNLALYFSGGDRQELKLRVTGRIWKEE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21132475 21133953 - Bpe016168.1 Bpe04g01449 103258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01449 304 CDD RING-HC_SIAHs 54 92 - -
Bpe04g01449 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe04g01449 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Bpe04g01449 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 303 - -
Bpe04g01449 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 297 IPR008974 GO:0005515
Bpe04g01449 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 163 IPR013083 -
Bpe04g01449 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 108 IPR013083 -
Bpe04g01449 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Bpe04g01449 304 SUPERFAMILY RING/U-box 49 95 - -
Bpe04g01449 304 SUPERFAMILY TRAF domain-like 109 301 - -
Bpe04g01449 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01154 Bpe04g01449 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01449 Bpe-Chr4:21132475 Bpe07g01014 Bpe-Chr7:15768477 5.80E-161 dispersed
Bpe03g01154 Bpe-Chr3:30581124 Bpe04g01449 Bpe-Chr4:21132475 0 wgd
Bpe04g01449 Bpe-Chr4:21132475 Bpe08g01243 Bpe-Chr8:13946624 4.84E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01449 K04506 - rcu:8260973 556.214