Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01456 ATGGCAGAAACTGAGGATATTCAGCCTCTTGTATGCGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCTAGCATTGTAGGACGTCCTCGTCACACTGGTGTAATGGTTGGCATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATACCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGTGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACCTTCAATACTCCGGCAATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGATGCCCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGGGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAACAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCGATGATCGGAATGGAAGCTGCTGGCATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCATTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCTCTCAGCACTTTCCAACAGATGTGGATTTCAAAGGCTGAGTACGATGAGTCTGGGCCGTCGATTGTGCACCGGAAATGCTTCTAA 1134 45.59 MAETEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21189952 21191618 + Bpe016175.1 Bpe04g01456 103265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01456 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bpe04g01456 377 SMART actin_3 7 377 IPR004000 -
Bpe04g01456 377 Pfam Actin 5 377 IPR004000 -
Bpe04g01456 377 PANTHER ACTIN 3 1 376 - -
Bpe04g01456 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bpe04g01456 377 Gene3D - 140 340 - -
Bpe04g01456 377 PANTHER ACTIN 1 376 IPR004000 -
Bpe04g01456 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bpe04g01456 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bpe04g01456 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bpe04g01456 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bpe04g01456 377 Gene3D - 10 371 - -
Bpe04g01456 377 PRINTS Actin signature 51 62 IPR004000 -
Bpe04g01456 377 PRINTS Actin signature 238 254 IPR004000 -
Bpe04g01456 377 PRINTS Actin signature 63 85 IPR004000 -
Bpe04g01456 377 PRINTS Actin signature 142 161 IPR004000 -
Bpe04g01456 377 PRINTS Actin signature 28 37 IPR004000 -
Bpe04g01456 377 PRINTS Actin signature 117 130 IPR004000 -
Bpe04g01456 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01456 K10355 ACTF; actin, other eukaryote - fve:101313911 748.043
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g01148 Bpe04g01456 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00134 Bpe-Chr1:786901 Bpe04g01456 Bpe-Chr4:21189952 0 dispersed
Bpe04g01456 Bpe-Chr4:21189952 Bpe08g00106 Bpe-Chr8:572280 0 dispersed
Bpe01g00753 Bpe-Chr1:6887099 Bpe04g01456 Bpe-Chr4:21189952 8.35E-27 transposed
Bpe03g00540 Bpe-Chr3:25626663 Bpe04g01456 Bpe-Chr4:21189952 8.16E-60 transposed
Bpe03g00737 Bpe-Chr3:27480402 Bpe04g01456 Bpe-Chr4:21189952 5.82E-40 transposed
Bpe06g00278 Bpe-Chr6:13735910 Bpe04g01456 Bpe-Chr4:21189952 0 transposed
Bpe10g00790 Bpe-Chr10:14056292 Bpe04g01456 Bpe-Chr4:21189952 4.63E-72 transposed
Bpe09g00552 Bpe-Chr9:14298660 Bpe04g01456 Bpe-Chr4:21189952 5.58E-104 transposed
Bpe03g01148 Bpe-Chr3:30472524 Bpe04g01456 Bpe-Chr4:21189952 3.62E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-214 740.3
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.3e-214 739.6
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.1e-213 738.0
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT2G37620 79.0 6.8e-119 424.1
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.2e-213 738.8
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.8e-213 737.6
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.8e-212 734.9
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.8e-212 734.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.0e-211 731.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G59370 79.0 2.9e-117 418.7
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.2e-213 738.8
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.6e-213 738.4
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.1e-213 736.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.3 8.1e-213 736.1
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 8.9e-212 732.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G46520 79.4 9.8e-118 420.2
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.7e-215 745.0
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.1e-215 743.4
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 741.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.8e-213 737.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G12110 79.4 6.8e-119 424.1
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 1.4e-209 725.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-209 724.5
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.1e-209 723.0
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.1e-208 721.5
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 4.6e-208 720.3
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.0e-208 719.9
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G18780 77.0 1.4e-116 416.4
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-210 726.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.4e-209 724.5
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.4e-209 723.4
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.1e-209 723.0
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.6e-208 721.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT1G49240 77.0 1.4e-116 416.4
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.4e-217 751.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.8 1.5e-214 741.9
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.3 7.3e-214 739.6
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.2e-213 738.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.6e-213 737.3
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G09810 79.4 8.9e-119 423.7
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT2G19760 77.1 4.4e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 5.8e-57 216.9
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT2G19760 75.9 4.1e-55 210.7
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.0e-54 206.8
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.7e-56 214.2
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29350 76.3 8.3e-56 213.0
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.4e-55 212.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 9.2e-55 209.5
Bpe02g02225 BCT,CCT 1 87 Cytoskeleton Gene Families AT5G56600 79.3 1.4e-37 152.1
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29340 79.1 2.3e-61 231.5
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29340 78.4 2.0e-60 228.4
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29340 74.6 4.5e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 7.7e-57 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01456 Bpe_Chr04 FPKM 12.877551 9.88448 0.209064 0.197823 7.43121 5.885126 6.345436 0.0 0.0 0.0