Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01472 ATGAATAGCTTGAGTGTTAACACGGAAGATTCTTTTGTGAGTTTGCTTGAACTTGCTGCTAATGACGATATTGAGGGGTTCAAAAGATTAATTGAACTCGATCCTTCTGGCATTGATGAGGTTGGTCTATGGTATTGCCGTAAGAAAGGCTCAAAGCAGATGGTTAATGAGCATCGAACTCCATTAATGGTGGCTGCTACGTATGGTAGCCTCGAAGTTATGAAGCTGATTTTGTCATTGTCTGATGCTTATATAAACCGAGCTGTTGGATTTGATAAAACTACTGCCCTCCATTGTGCTGCCTCTGGTGGAGCAATAAACTGTGTCGATGCTGTGAAATTGCTTTTATCAGCAGGGGCTGATCTGAATTTGATTGACGGAAGTGGACATTATCCGATCGATGTCATTGCTGTTCCTCCAAAGCTTTCAGATTCAAAGTTTATTCTCGAAGAGCTTCTGAAACCAAATGGTTCTTCCAGTTCAACGGGAACGTTGTATTCTAATTCGCCTCCCCTTATGTCGTCCCCTAAAAAGATCTCTTTGGCTTTGGATTTTCCATATTCACAAGCTAATTCCAAATTCAATGATCTTCATGTCTCTTCTTCATCGGAGAAGAAAGAGTACCCTATCGATCCATCTCTCCCAGACATCAAGAACAGCATATACTCGACCGATGAATTTCGGATGTATTCGTTTAAGGTGCGGCCTTGTTCTCGTGCCTATTCGCATGATTGGACGGAGTGCCCTTTTGTCCATCCGGGAGAAAATGCTCGAAGAAGGGATCCGAGGAAGTACCATTACAGCTGTGTTCCTTGTCCTGATTTCAGAAAAGGGGCTTGTAGGCGGGGAGATTTGTGTGAATATGCCCATGGAGTTTTCGAGTGTTGGCTACACCCAGCTCAGTATAGAACACGACTCTGCAAAGATGGTACAAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTCCGACCTTTATATGTATCGACTGGCTCTGCTGTTCCTTCTCCTCGGGCTGGTTCGTCTGGGGCATCTGTACTGGATTATGCCTCGGCCATGAATATCTTGCCTGGTTCTCCGTCGGCGATGTCTGTTATGTCTCCCACACCCTTCACTCCTCCGATGTCTCCCTCAGGGGCCCACTCTTCTTTGGCTTGGCCTCAGCCAAATGTTCCGGCATTGCATCTTCCCGGAAGCAATTTTCAGTCAAGTCGGCTGAGATCGTCTGTAAATGCGAGAGATATTTTGACAGAGGATTTTGATTTACTTCCGGACTTTGATATTCAGCAACAACTTTTAAATGATCTATCTTGTCTCTCTCAGCCGAATATGGGTTCTAATTCTTTGAACCGTTCTGGTCGGATGAAAGTATTAACCCCGTCGAATCTTGACGATCTGTTTTCTGCTGAGAGTTTGTCTCCTAGGTACACTGATCAGGCATTGGCTTCGACTGTTTTCTCCCCCACTCACAAGTCAGCTGTTCTTAGCCAATTTCAGCAGCAGCAGAGTATGCTGTCTCCTATCAACACCAACTTCTCCCCTAAAAATGTGGATCACCCTCTTTTACAGGCATCATTTGGGGTACCATCTGGAAGAATGTCTCCGAGAAATGTGGAACCCATCTCACCGATCAGCTCCCGTATGTCAATGTTGGCTCAGCGAGAGAAACAGCAACAGTTCCGCAGCCTCAGCTCCCGGGAACTTGGTGCGAATTCTCTGCATGGTGGTGGTTCAGCTGGAAGCAGCTCTTGGTCTAAATGGGGATCTTCCAATGGAAAGCCTGACTGGGCTGTTTCGGCTGATGAATATGGTAAGATCCGCCGATCTTCTTCATTTGAGCTTGGAAATAATGGGGAAGAGCCAGATTTATCATGGGTTCAATCTCTTGTCAAAGAATCGCCTACTGATATGAAGGAAAGTCAGACAATTCCATTTTCTGGGAATGCAAACAATGGCAAGGCAGCAAATGTAAGTTCTCAGATGGAATCAACCGATCATGCCGTTTTGGGGGCATGGCTAGAACAAATGCAGCTCGATAATCTGGTAGTGCAGCAAAATTAA 2073 45.49 MNSLSVNTEDSFVSLLELAANDDIEGFKRLIELDPSGIDEVGLWYCRKKGSKQMVNEHRTPLMVAATYGSLEVMKLILSLSDAYINRAVGFDKTTALHCAASGGAINCVDAVKLLLSAGADLNLIDGSGHYPIDVIAVPPKLSDSKFILEELLKPNGSSSSTGTLYSNSPPLMSSPKKISLALDFPYSQANSKFNDLHVSSSSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVPSPRAGSSGASVLDYASAMNILPGSPSAMSVMSPTPFTPPMSPSGAHSSLAWPQPNVPALHLPGSNFQSSRLRSSVNARDILTEDFDLLPDFDIQQQLLNDLSCLSQPNMGSNSLNRSGRMKVLTPSNLDDLFSAESLSPRYTDQALASTVFSPTHKSAVLSQFQQQQSMLSPINTNFSPKNVDHPLLQASFGVPSGRMSPRNVEPISPISSRMSMLAQREKQQQFRSLSSRELGANSLHGGGSAGSSSWSKWGSSNGKPDWAVSADEYGKIRRSSSFELGNNGEEPDLSWVQSLVKESPTDMKESQTIPFSGNANNGKAANVSSQMESTDHAVLGAWLEQMQLDNLVVQQN 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21301267 21303339 - Bpe016194.1 Bpe04g01472 103281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01472 690 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Bpe04g01472 690 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bpe04g01472 690 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Bpe04g01472 690 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Bpe04g01472 690 PANTHER UNKEMPT FAMILY MEMBER 1 687 IPR045234 -
Bpe04g01472 690 MobiDBLite consensus disorder prediction 639 659 - -
Bpe04g01472 690 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 687 - -
Bpe04g01472 690 MobiDBLite consensus disorder prediction 572 595 - -
Bpe04g01472 690 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Bpe04g01472 690 Gene3D - 268 329 - -
Bpe04g01472 690 SUPERFAMILY Ankyrin repeat 11 137 IPR036770 -
Bpe04g01472 690 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bpe04g01472 690 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bpe04g01472 690 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Bpe04g01472 690 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Bpe04g01472 690 Gene3D - 5 154 IPR036770 -
Bpe04g01472 690 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bpe04g01472 690 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02219 Bpe-Chr2:23235449 Bpe04g01472 Bpe-Chr4:21301267 7.23E-61 dispersed
Bpe03g01118 Bpe-Chr3:30267889 Bpe04g01472 Bpe-Chr4:21301267 0 dispersed
Bpe04g01472 Bpe-Chr4:21301267 Bpe11g00093 Bpe-Chr11:651152 0 dispersed
Bpe13g01268 Bpe-Chr13:17880145 Bpe04g01472 Bpe-Chr4:21301267 6.93E-60 dispersed
Bpe04g01472 Bpe-Chr4:21301267 Bpe03g00541 Bpe-Chr3:25640373 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21343 PF12796 Ank_2 1.20E-10 CL0465 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01472 - - mnt:21390368 1068.53