Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01486 ATGGATCCGGCGAAAACGCCCCTTGGCAAGATGCTGCTGGAAGGAATCACTCCGGTTGTCATGGTCCTCCACACTTCTCTCGTCGAAGAGGCTTGCCTCAAGAACGGTCTCACATTTGTCCAGATGCTTAGCCCCTTTTGCTCATTCAGCAACATTGACGTGCCTGTTCGGACGGCCAGTGACCAACCTTACAGGATTCAAAAGTTCAAGCTACGGTTAGTTCACGCCTCAGACATTCGGAAGCCGAACTGGGAGGTGTCAAAAGAGCGACTTAAAGATGTTATCACACAAGCTGGCGAGAAGGTTTTTTCTGAATTGGGGTCAGATCCACCCCAAATTGATAATGCGCTTGGGAGATCTGAATCTGAAGTTCTTCCACCTTGGTTTCAAATATTTAATGAGGAGCTTTTATGTGCTGCGTCATTTTCAGAGCACGAAGCTTTTGACCATCCTGTGGCATGCCTTTTGGCGGTCTCTTCTAATGATGAACATCCCATTAACCGATTTGTTGATTTCTTTAACTCTGACAAGCTACCTTCTCTTTTCAATGATGGTTGTATGGACACAAAGATCTTAAAGCATTACTTATTAGTGCACGATAATCAAGATGGCAATTCAGAGAAGGTGGTCAAATTATTATCTGAAATGAAGAGTACATTCGGTTCTAATGACTGTCAATTACTATGTATCAATTCATCTCAAGATGGATCAGTTGAATATCAAGATAGTCCTTGGGATTCTCTTGTAAGTATTTCTAGAGTGTTTCTTTTATGGCTCGTTTGTTTTTTTCCCCTAAATGATGGTAAGTTTATAAAAGATTTAATGCAAGATTTATCATCTCAACGAATCATCCCCTACATGGAAGAAAAAATACGTTTATTAAATCAGCAGGTTTCCGCTACAAGGAAAGGTTTTAGAAACCAGATTAAGAACTTATGGTGGAGAAAAGGAAAAGAAGACGCCGTAGAGTCGCCTAATGGTCCCATATATACATTTAGCTCCATCGAGTCTCAGATTAGAGTTTTGGGTGACTATGCCTTCTTGTTACGAGATTATGAACTTGCATTGACAAATTACCGCTTGATTTCAACTGACTACAAGCTTGATAAAGCTTGGAAACGATATGCTGGAGTGCAGGAGATGATGGGACTTGCGTATTTCATGCTGGATCAGTCAAGAAAGGAAGCTGAATACTGCATGGAAAATGCATTTACCACTTATTTGAAAATTGGATCATCTGCTCAGCGGAATGCAACACGATGTGGCCTTTGGTGGGCGGAGATGTTGAAGACAAGGGACCAATACAAAGAAGCTGCTGCTGTCTACTCTCGTATTTGTGGTGAGGATAAACTTTTATCTCTTAAGGAGATTTTACATTCAGCAGTGATGCTTGAGCAAGCATCTTTCTGCTACTTACTGTCCACCCCTCCACTGTTGAGGAAATATGGATTTCATCTTGTTCTTTCCGGGGATCGTTACAAGAGATCTGATCAGATTAAGCATGCAATCCGTACATATAGAAATGCTCTTTCAATTTTTAAGGGAACTATGTGGAGCCACATCAAAGACCATGTTTGTTTCCACATTGGGCAGTGGTATGCTTTTCTTGGGATGTACGATGTTGCAGTCTCACAAATGTTGGAAGTTCTTGCCTGTAGTCATCAGTCAATGGGGACACAAGAATTGTTTTTGAAGGACTTTCTTCAAACCGTTCAGAAAACAGGAAGGACATTCGAGGTTTTGAAACTGCAGCTACCCAAGATAAACTTCTCGTCACTTAAGATTGCCTTTGAAGATCATCGAACTTATGCATCGCCTGCAGCTGCTGGTGTTAAAGAAAGTTTGTGGCAATCTTTGGAGGAAGACATGATTCCATCGTTATCCTCTGTAAAGTCTAATTGGTTGGAGTTGCAATCAAAGATTGTTTCAAAAACATTCAAAGAATCAAATATTTGTGTCGCCGGAGAATTAGTGAAGGTGGATATTGAATTAAAAAACCCTCTGCAAATCCCCATTTCTATCTCTAGTGTTTCTCTCATATGTGAGCTTTCCTCAGAATCCACTGAAACTAGCTCAGTTGCTGGCTGTGCTAGTAGTGAATTTATAGGAATAGTTTTCTTCTCTATGTATCTAGTGGCAGTTGACTCCATATTTCTCCAGGTGCAACTGTCTGTCACTCCTAATGTAGAAGGCATTCTACAAATCCTCGGTGTAAGGTGGAAATTGTCAAGTTCTATAGTTGGTTTTCACAAATTTGAGTCTGATATTGGAAAGAAGAAAACTATAAATGGAAGACAGAAATCCAAGCACTCTCCTATTGATAACCTTAAGTTCATAGTGATCCAGAGCCTTCCTAAGCTTGAGGGCTTCATTCAACAGCTGCCTGCAATAGTATATGCAGGCGATCTCCGGCCTCTTGTTCTGGAATTGAGGAATCAATCTGAGTACTCTGTGAAGAATTTAAAAATAAAGATTAGTCATCCAAGATTCGTTAGCATTGGTAAGCAAGAGAAATCAAACATAGAGTTTCCTGCGTGCTTGGAGAAGACTATGACTTCTGAAGAGGGAAGTACATATGACGCTCCTAGCATGTCTAATGAGACTTTTTTCTTTCCTGAGGATACTTCAATCCAAAAAGGGAAGCCATTTTTGTGGCCTCTTTGGTTTCGGGCAGCTGTCACTGGAAATATATCCTTGTGTATTGCTATATATTATGAGATGAAAGATATATCAAGCATCATGATCTATCGTACTTTACGCATGCAGTATAGTCTTCAGGTGCTTCCTTCGCTGGATGTTTCCTTCCAAATCAATCCTTGTTCATCAAGGTTGCAAGAATTTCTTGTGCGCATGGACGTCATTAATAGAACCAGCGCTGAGGTTTACCAGGTTCACCAACTATCATCGGTTGGAAAGCAGTGGGAACTCTCTTTGCTTCAACCTGTTGATACCATATTTCCTTCTCGAGCTCTGATTCCTGGTCAAGCCCTTTCAGTCTTTTTCGTGCTTAAGGATATTAAAAACTTGGTAGGTTCTGAAGATAGGACGTCTTCTGTCTTGCCATTGTCTGGAAGTGATCTTAGCTTGATTCCTCGTGATAGTGACATAAAGCTTTTTGATACATCCTTTTCACCTTTGGCTGATTTCCACCATTCTGAAAGATTACTCCAGGAAAGAACACATGGGGACTCAAATACAGTAGACTTCATATTAATATCTCAATCCCATAAGGAAGGTGTTCAAACTGGAATACAAGATCCGCCTCGACTATTTTCTCATCACGTATGTCATTGCAGTACTTCAAGTTCCAGTCCTATCTCATGGTTAGTCGACGTCCCTAGAACAATATATCATGACTTTTCGGCATCTTTTTGCAAAATTAAGTTGACGATGACGGTCCAAAACTCTTCGAACACTGTTGCATCCGTTCACATCGACACAAATGATTCGACCACTAGTAGCAGCCTTCTAAACAGCGATGAAGCTACACCAGTCGGATGGTATGATATGTCACAAATCCACGACGAAAAGGTCAAATCAGACAGTCTTGGATCCCAAATGGGGAAGTCACTTTCTCCCGAAAGTGTCTCCCCTTTCGTTTGGTCTGGATTATGTTCGAGGAGATTGCGTTGGAATCTTCTACCCTTCAATGGTGAAGAAAATTTCGGTGGAACGAGTCAGTCCTCCGGAACTTGCAAGGGGTATCCATATTATCTTACAATTCCTAAAATATTCTCCAAAATGAACGATTTGTTCTCTTCCCGGTCTTTCTCCCGCGATCGCCCCGGCGTCGAGATGACCAATTCGAATTCAGAAAGCGCAGTCAACCTCGACAAGTTCTTCGACGACGTCGAGTCCGTGAAGGACGAGCTGAAGGAGCTCGAGGACTTGTATGCCCGATTGCAACGCTCTCATGAGCAGAGCAAGACTCTCCACAACGCTAAGGCCGTGAAGGAGCTCCGTTCACGCATGGATTCCGACGTATCGCTTGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGATTGGAAGCTCTAGACAGGTCTAATGCTGCTAATCGGAGCTTGCCTGGTTGCGGACCTGGATCTTCATCGGACCGGACCAGAACGTCGGTGGTCAATGGACTGAGGAAGAAGCTACAGGATGCTATGGAGAGCTTCAACAATCTGAGACAGCAGATCTCGTCTGAGTACAGAGAGACCGTAGAACGGAGGTACTTCACCGTGACCGGTGAAAATCCCGACGAGAAAACCCTTGACCGGTTGATCTCTACAGGCGAAAGCGAGACGTTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGAGGCACGATGCAGTTAAAGACATGGAGAAGAACCTCAAGGAACTCCACCAAGTTTTCATGGATATGGCTGTGTTGGTGCAGGCTCAAGGAGAGCAACTCGACGACATCGAGAGCCAGGTGGCGAGGGCTCATTCGTTTGTCAGAGGCGGAACACAGGAGTTGCAGACAGCAAGGGTGTACCAGAAAAATACTCGGAAATGGGTAATTATTTCTACCATTGTTTTGCTTATTATCATCATTGTGATTGTTCTGATAATCGTAAAGCCTGGAAGTAATAGTGGGAATAGTCAAAATAGTGGGAGTACAACACCAGCTTAG 4674 42.66 MDPAKTPLGKMLLEGITPVVMVLHTSLVEEACLKNGLTFVQMLSPFCSFSNIDVPVRTASDQPYRIQKFKLRLVHASDIRKPNWEVSKERLKDVITQAGEKVFSELGSDPPQIDNALGRSESEVLPPWFQIFNEELLCAASFSEHEAFDHPVACLLAVSSNDEHPINRFVDFFNSDKLPSLFNDGCMDTKILKHYLLVHDNQDGNSEKVVKLLSEMKSTFGSNDCQLLCINSSQDGSVEYQDSPWDSLVSISRVFLLWLVCFFPLNDGKFIKDLMQDLSSQRIIPYMEEKIRLLNQQVSATRKGFRNQIKNLWWRKGKEDAVESPNGPIYTFSSIESQIRVLGDYAFLLRDYELALTNYRLISTDYKLDKAWKRYAGVQEMMGLAYFMLDQSRKEAEYCMENAFTTYLKIGSSAQRNATRCGLWWAEMLKTRDQYKEAAAVYSRICGEDKLLSLKEILHSAVMLEQASFCYLLSTPPLLRKYGFHLVLSGDRYKRSDQIKHAIRTYRNALSIFKGTMWSHIKDHVCFHIGQWYAFLGMYDVAVSQMLEVLACSHQSMGTQELFLKDFLQTVQKTGRTFEVLKLQLPKINFSSLKIAFEDHRTYASPAAAGVKESLWQSLEEDMIPSLSSVKSNWLELQSKIVSKTFKESNICVAGELVKVDIELKNPLQIPISISSVSLICELSSESTETSSVAGCASSEFIGIVFFSMYLVAVDSIFLQVQLSVTPNVEGILQILGVRWKLSSSIVGFHKFESDIGKKKTINGRQKSKHSPIDNLKFIVIQSLPKLEGFIQQLPAIVYAGDLRPLVLELRNQSEYSVKNLKIKISHPRFVSIGKQEKSNIEFPACLEKTMTSEEGSTYDAPSMSNETFFFPEDTSIQKGKPFLWPLWFRAAVTGNISLCIAIYYEMKDISSIMIYRTLRMQYSLQVLPSLDVSFQINPCSSRLQEFLVRMDVINRTSAEVYQVHQLSSVGKQWELSLLQPVDTIFPSRALIPGQALSVFFVLKDIKNLVGSEDRTSSVLPLSGSDLSLIPRDSDIKLFDTSFSPLADFHHSERLLQERTHGDSNTVDFILISQSHKEGVQTGIQDPPRLFSHHVCHCSTSSSSPISWLVDVPRTIYHDFSASFCKIKLTMTVQNSSNTVASVHIDTNDSTTSSSLLNSDEATPVGWYDMSQIHDEKVKSDSLGSQMGKSLSPESVSPFVWSGLCSRRLRWNLLPFNGEENFGGTSQSSGTCKGYPYYLTIPKIFSKMNDLFSSRSFSRDRPGVEMTNSNSESAVNLDKFFDDVESVKDELKELEDLYARLQRSHEQSKTLHNAKAVKELRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDAMESFNNLRQQISSEYRETVERRYFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMAVLVQAQGEQLDDIESQVARAHSFVRGGTQELQTARVYQKNTRKWVIISTIVLLIIIIVIVLIIVKPGSNSGNSQNSGSTTPA 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21389123 21424921 - Bpe016208.1 Bpe04g01486 103295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01486 1557 CDD SynN 1277 1434 IPR006011 GO:0016020
Bpe04g01486 1557 SMART SynN_4 1272 1398 IPR006011 GO:0016020
Bpe04g01486 1557 Gene3D - 1443 1540 - -
Bpe04g01486 1557 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1447 1509 IPR000727 -
Bpe04g01486 1557 ProSitePatterns Syntaxin / epimorphin family signature. 1453 1492 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bpe04g01486 1557 Gene3D Tetratricopeptide repeat domain 333 560 IPR011990 GO:0005515
Bpe04g01486 1557 PANTHER TRANSPORT PROTEIN TRAPP 8 1210 IPR024420 -
Bpe04g01486 1557 Pfam Syntaxin 1279 1482 IPR006011 GO:0016020
Bpe04g01486 1557 SUPERFAMILY t-snare proteins 1276 1502 IPR010989 GO:0016020|GO:0016192
Bpe04g01486 1557 Coils Coil 1372 1399 - -
Bpe04g01486 1557 Gene3D - 1275 1407 - -
Bpe04g01486 1557 SMART tSNARE_6 1442 1509 IPR000727 -
Bpe04g01486 1557 Coils Coil 1447 1467 - -
Bpe04g01486 1557 Pfam SNARE domain 1483 1535 IPR000727 -
Bpe04g01486 1557 Coils Coil 1277 1311 - -
Bpe04g01486 1557 SUPERFAMILY TPR-like 395 558 IPR011990 GO:0005515
Bpe04g01486 1557 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 525 IPR024420 -
Bpe04g01486 1557 CDD SNARE_syntaxin1-like 1446 1508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00396 Bpe-Chr1:2457994 Bpe04g01486 Bpe-Chr4:21389123 1.91E-114 dispersed
Bpe04g01486 Bpe-Chr4:21389123 Bpe08g00351 Bpe-Chr8:2103594 4.14E-118 dispersed
Bpe02g00700 Bpe-Chr2:4746882 Bpe04g01486 Bpe-Chr4:21389123 3.89E-133 wgd
Bpe03g01190 Bpe-Chr3:30806605 Bpe04g01486 Bpe-Chr4:21389123 7.31E-177 wgd
Bpe04g00619 Bpe-Chr4:3961756 Bpe04g01486 Bpe-Chr4:21389123 2.19E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01486 K20305 - qsu:112032498 1607.42