Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01488 ATGAAAGATCCGGTCACTGTTTCATCCGGGATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAACAACAAGGATTCTTGTCCAGTCACGAAACAACTCCTCGCCGGCTCTGATCTCACTCCTAACCATACTCTCCGGCGACTTATGCAGGCGTGGTGCACCGTCAACGCCTCCAACGGCGTCGAGAGGATTCCGACGCCTAAACCTCCTATTACCCAAGCACAGATTAGCAAGATTCTCAACGATGGGAAATCGCCACTCTCTCAGCTTAAATGTCTCAAAAAACTCCGATCCATCGCAGCTGAGAGCGAGACGAACAAACGTTGTATGGAAGCCGCCGGCGCCTTCGAGTTCTTAGCCTCGATAGTGGCGTCCTCCGTTTCTGACTCACCTTCAGAAGATTCCGGCGATGCTTTTGAACGCACTCGAACGTGCGATGAGGCTTTGAGTATTCTGCATAATCTTCAAATCTTCGAAGCAGGAATGAAAACTCTCGACGGAAAGAATGGAGAATTCGTCGAAACGTTAGTCAAAGTAATGCACCAAGGAAGCTATGATTCAAGAGCCTATGCAACTATGTTACTGAAATCATTACTGGAACTCGCCGATCCGTTAAACCTAGCCAATCTTAGAGTCGAGTTCTTTGCCGAAATAATTCAAGTTCTCAAAGATCAAATCTCCCACAAATGTTCCATATCTGCACTGCAAATGCTCATAAACCTCCTCCCGTGGGGGAGAAATCGGATAAAAGCCGTCGAGACCGGTGGCGTAGTAGTTCTAATCGATCTTCTTCTCAGCTCCACTGAGCGCCGGCCATGTGAGATGGCCCTCACAGCCTTAGACTTGTTATGTGGGTGTGCCGACGGGCGGGCGGAGTTGCTCCACCACGGAGCGGGGATGGCGGTGGTGTCGAAGAAGATTCTCAGAGTTACTAAGGTGGGAAACGAGAAAGCCGTCCGGATTCTGAATTCGATAGCGAAATATTCGGCAACCCCGGCCGTTCTTCAGGAAATGCTGAGTCTGGGTGTCGTCGCAAAACTGTGCCTGGTTCTTCAGGTGGAATGTGGAAGCAAGACGAAGGAGAAAGCGAGGGAGATTCTGAAGTTTCACTCTCGTTCATGGCGGAATTCACCATGCATTCCTGCTAATTTGCTGTCATCTTATCCATCTTCTTCTTGCGATTAG 1194 48.99 MKDPVTVSSGITYDRQSIEKWLYSNNKDSCPVTKQLLAGSDLTPNHTLRRLMQAWCTVNASNGVERIPTPKPPITQAQISKILNDGKSPLSQLKCLKKLRSIAAESETNKRCMEAAGAFEFLASIVASSVSDSPSEDSGDAFERTRTCDEALSILHNLQIFEAGMKTLDGKNGEFVETLVKVMHQGSYDSRAYATMLLKSLLELADPLNLANLRVEFFAEIIQVLKDQISHKCSISALQMLINLLPWGRNRIKAVETGGVVVLIDLLLSSTERRPCEMALTALDLLCGCADGRAELLHHGAGMAVVSKKILRVTKVGNEKAVRILNSIAKYSATPAVLQEMLSLGVVAKLCLVLQVECGSKTKEKAREILKFHSRSWRNSPCIPANLLSSYPSSSCD 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21453909 21455102 - Bpe016210.1 Bpe04g01488 103297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01488 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 393 - -
Bpe04g01488 397 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Bpe04g01488 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Bpe04g01488 397 Gene3D - 76 380 IPR011989 -
Bpe04g01488 397 SMART Ubox_2 1 55 IPR003613 GO:0004842|GO:0016567
Bpe04g01488 397 SUPERFAMILY ARM repeat 80 369 IPR016024 -
Bpe04g01488 397 PANTHER WDSAM1 PROTEIN 1 393 IPR045185 GO:0061630
Bpe04g01488 397 SUPERFAMILY RING/U-box 1 60 - -
Bpe04g01488 397 ProSiteProfiles U-box domain profile. 1 62 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01488 Bpe-Chr4:21453909 Bpe08g00226 Bpe-Chr8:1261400 1.03E-153 dispersed
Bpe01g00268 Bpe-Chr1:1610696 Bpe04g01488 Bpe-Chr4:21453909 6.34E-150 wgd
Bpe03g01192 Bpe-Chr3:30821820 Bpe04g01488 Bpe-Chr4:21453909 0 wgd
Bpe04g01488 Bpe-Chr4:21453909 Bpe08g00225 Bpe-Chr8:1255473 5.59E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01488 - - mnt:21399943 540.036