Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe04g01555 | ATGGAACAACGTACAAAGTATCAGGTATCATTGAGGGGGGCAAGTACCAAAGAAATTTCAAGGGATTCCCTACTTCAAAAGGTCATTCAAGAAAGAGATCTCCGACACTATGCCAGAAGAGCTTCGGCTGCTGTTCTCTTTATTCAGAGAGTTTGGAGGCGCTATAAGGTGACCAAAGAGGCTGCTTTGCTGTTTCAGGAAGAATGGGAACAGTTAGTGAATAATTCTGAAGGCATCATGAGCAGGCAAATTATTTCTGAAAAGATTTTGAGGCCATTTCTTTTTTTCATCTCATGCTTATCAACCTGGCTTCATAAGGTGCAGAACAGAGAAATTGTGTGTGCAAAGAATTGCTTTAAAATCCTGTTGGAAAGCATGAACTCCAGTGAATCAGAGAACAATTTTTGCTCCCTTGCTATGGGTACATCCGAAGAAAGAAGAATTTGGATGTATCAATCTCGGAAGTTGATTTCCCTCTGCATATTGGTTCTTTCCCAGTTTGAAAAATCACGTGCAAACGATCAAGAAATTGTTGCTTTAACTTCTCTAGCAATGCGTCTCGCTGTTGTATTAACTGATGCTAAAAGCTGGAAAAACATCACTGATGGACATCAGGATGCCGCTGTGGCAGTCAAGAATTTAATTCGATTTATGGGGAGTGCTGAAAGTGGTCTCTATATTTCAATCAGACAATACATGATTAGATTGAACGTACATCTAACTTTACAGAACCGTGTCCAGACAAATGATGAGCTCTTGATAAGTGCAAGTGCAATAACTTTAGCTCTGCGACCGTTTCATTTAACAGCTTTTGATCTGAATTTACCTGATTCTTGGGAAGGGTGTTTTGCTGCCGAACAGTTTTGCTTGCTTGTACTTACTGTTCCTTGGTTTATGCAACGGCTCCCAGCTGTTCTTTTACCAGCTGTGAAGCACAGGTCTATTCTGTTACCGTGCTTGTGGACCATATTGGTTTCAAAAGATAAATTTTTACAGGAAATGTCTAAATTGGATCAATCAAGTGTTAGTTCTTGTTCTGAACTTGCTCCATCTGTTGGGTGGGTTCTTGCAAACATTATCTCTCTGGTGACAGGCAGCGAAAATAACTGTATTGATCCTGGATGGTTCCAACAAGGTTTTGACTATGCGTTGTATGTCCTTGCAACATTAGCTTTGGCTAAGAACTTTTTAACTGTGCTTAGAGATGTTAGATGTTGTCAAAAGTTCAATCAGAATCAATATAATCTGGGTCTTCCTGAAACTTTATCAGACCTTTCTGCTGCAGTTGGACCTGAGAGTGAGCCAGGACCCAAGTCTTCAACTCTTCTGTACCGTGATATGTTTAGGCCTGTTTTTCAACAGTCACATCTTTCCAATCTTTTGACACTTGTGAATAAAGCAACTGTGACTGCACCTCCAATAAGATTGGAATATTTGCGGAACGTGGAGCTGGTTGATATTGTGTATTTTTATTCTTACATGCTACAAATATTATCATTCTTGAGCCCTATGGTTGGATCATTACCTATTCTCAATTTGCTATCTTTTACTCCTGGATTTCTTGTTGACATATGGCAAGTGTTGGAAAGTTGCCTTTTTCCTGTTGATGGTGGGAATGCAGAGGATAAATCATCATGTGCTGGTAAGATATCAAAAAATAAAAAAAATAGGACTCTTGAGAAAAAGCAAAAGCAAACGAGCAAGGATGGAGCTCATAAATGGGTAGCTGCATTGCACAAGTTTACCAGCAAACCACAGGCAGGTGGTGCTTGTATTGATGCAATGTTAGATGAAGAATCAAGTGATGAATGGGATGTAATATCTTTAGGTCTTGGTCCGGAAGGTGTTTCAAAAGATACATTATGTCTACTCTACCTTTTCAGTGCCACTTATTCTCATCTTCTATTAATTCTAGATGACATAGAGTTCTATGAAAAACAGGTCCCTTTCACATTGGAACAGCAAAGAAGGATTGCATCTGTGTTCAATACGTTAGTGTACAATGGCTTATCTCATGGTATCAGAAAGCAGAACAAACTCATTCTGGATTCTGCTATCAAATGCTTGCATCTCATGTACGAGAGGGATTGCAGACACCGGTTTTGTTCCAGTGATCTTTGGCTTTCGCCTGCTAGAAAAAGCCGCCCCTCTGTGGCAGTTGCAGCTAGAACTCATGAAGTGTTGTCAGCTAATCAAATATCAGATGATTCTTTGACTGTTCCAGCTACAAACTCTGTTATAACAACCATGCCACACGTATTTCCATTTGAGGAAAGAGTTGAAATGTTTAGAGAGTTTGTCAGGATGGACAAAGTCTATCGAAAAATGGCTGGGGAAATTTCTGAACCTGGTTCACGATTAGTGGAAATTGTAGTCCGTCGCAGTCACATTGTTGAAGATGGATTCCGACAATTGAATTCCCTTGGGCCAAAGTTGAAATCGTTTATCCACGTCTCTTTTGTTAGTGAATGTGGCCTTCCTGAAGCTGGTCTTGATTGTGGTGGATTATCTAAGGAGTTTTTAACTGACATAGCCAAAGCAGCTTTTGCCCCTGAGTATGGGCTATTCTCCCAAACTTCTACTTCAGATAGACTCTTGATTCCTAATACATCTGCAAGATATCTTGAAAATGGCATCCAGATAATAGAATTTCTGGGTAGAATTGTTGGTAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTTTCACATATCTTTGTGCAAAAGCTCTTAGGACGGTATAGCTTTTTGGATGAACTATCTACGCTTGATCCAGAGCTCTATAAGAATCTCATGTATGTGAAGCACTGTACCGATGATGTCAAGGAATTATCCCTGGATTTCACTGTTACTGAAGAATCATTTGGAAAACGGCGTGTTATAGATCTTATACATGGTGGCAAGAATATTCCTGTTACAAATGATAACAAGATGCAGTATGTTCATGCAATAGCAGATTATAAACTTAACCGACAGATACTTCTCTTTTCAAATGCATTTTACAGAGGACTAACTGATCTTGTATCACCATCTTGGTTGAAATTATTTAATGCAAATGAATTTAATCAGTTGCTTTCAGGTGGGAAATATGACATTGACGTGGAGGATTTGAGAAATAATACACGTTATACTGGTGGCTACACAGAAGGAAGCCGTACCATTAAAATTTTTTGGGAGGTTATTGAAGAATTAGAGCCAAAAGAACGTTGTATGCTTCTTAAATTTGTTACAAGTTGTTCTCAAGCTCCTTTGCTGGGGTTCAAACACTTGCAACCAACCTTTAATATCCATAAAATTACTTGTGATGTTCCTATCTGGGCCTCGATAGGAGGGCAGGACGTGGATCGGCTTCCATCAGCTTCCACGTGCTATAATACTCTAAAGCTACCAACCTACAAACGCCCAAGCACCTTGAGAGCCAAGCTTCTGTATGCAATCAATTCCAATTCAGGATTCGAGCTTTCTTGA | 3471 | 39.44 | MEQRTKYQVSLRGASTKEISRDSLLQKVIQERDLRHYARRASAAVLFIQRVWRRYKVTKEAALLFQEEWEQLVNNSEGIMSRQIISEKILRPFLFFISCLSTWLHKVQNREIVCAKNCFKILLESMNSSESENNFCSLAMGTSEERRIWMYQSRKLISLCILVLSQFEKSRANDQEIVALTSLAMRLAVVLTDAKSWKNITDGHQDAAVAVKNLIRFMGSAESGLYISIRQYMIRLNVHLTLQNRVQTNDELLISASAITLALRPFHLTAFDLNLPDSWEGCFAAEQFCLLVLTVPWFMQRLPAVLLPAVKHRSILLPCLWTILVSKDKFLQEMSKLDQSSVSSCSELAPSVGWVLANIISLVTGSENNCIDPGWFQQGFDYALYVLATLALAKNFLTVLRDVRCCQKFNQNQYNLGLPETLSDLSAAVGPESEPGPKSSTLLYRDMFRPVFQQSHLSNLLTLVNKATVTAPPIRLEYLRNVELVDIVYFYSYMLQILSFLSPMVGSLPILNLLSFTPGFLVDIWQVLESCLFPVDGGNAEDKSSCAGKISKNKKNRTLEKKQKQTSKDGAHKWVAALHKFTSKPQAGGACIDAMLDEESSDEWDVISLGLGPEGVSKDTLCLLYLFSATYSHLLLILDDIEFYEKQVPFTLEQQRRIASVFNTLVYNGLSHGIRKQNKLILDSAIKCLHLMYERDCRHRFCSSDLWLSPARKSRPSVAVAARTHEVLSANQISDDSLTVPATNSVITTMPHVFPFEERVEMFREFVRMDKVYRKMAGEISEPGSRLVEIVVRRSHIVEDGFRQLNSLGPKLKSFIHVSFVSECGLPEAGLDCGGLSKEFLTDIAKAAFAPEYGLFSQTSTSDRLLIPNTSARYLENGIQIIEFLGRIVGKALYEGILLDYSFSHIFVQKLLGRYSFLDELSTLDPELYKNLMYVKHCTDDVKELSLDFTVTEESFGKRRVIDLIHGGKNIPVTNDNKMQYVHAIADYKLNRQILLFSNAFYRGLTDLVSPSWLKLFNANEFNQLLSGGKYDIDVEDLRNNTRYTGGYTEGSRTIKIFWEVIEELEPKERCMLLKFVTSCSQAPLLGFKHLQPTFNIHKITCDVPIWASIGGQDVDRLPSASTCYNTLKLPTYKRPSTLRAKLLYAINSNSGFELS | 1156 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21883132 | 21891681 | + | Bpe016276.2 | Bpe04g01555 | 103364 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe04g01555 | 1156 | CDD | HECTc | 789 | 1154 | IPR000569 | GO:0004842 | |
| Bpe04g01555 | 1156 | Gene3D | Hect, E3 ligase catalytic domain | 1031 | 1155 | - | - | |
| Bpe04g01555 | 1156 | Gene3D | Hect, E3 ligase catalytic domains | 790 | 1028 | - | - | |
| Bpe04g01555 | 1156 | SMART | hect_3 | 806 | 1156 | IPR000569 | GO:0004842 | |
| Bpe04g01555 | 1156 | Gene3D | Hect, E3 ligase catalytic domain | 914 | 993 | - | - | |
| Bpe04g01555 | 1156 | SUPERFAMILY | Hect, E3 ligase catalytic domain | 788 | 1149 | IPR035983 | GO:0004842 | |
| Bpe04g01555 | 1156 | PANTHER | UBIQUITIN-PROTEIN LIGASE E3C | 3 | 1156 | - | - | |
| Bpe04g01555 | 1156 | Pfam | HECT-domain (ubiquitin-transferase) | 843 | 1156 | IPR000569 | GO:0004842 | |
| Bpe04g01555 | 1156 | ProSiteProfiles | HECT domain profile. | 812 | 1156 | IPR000569 | GO:0004842 | |
| Bpe04g01555 | 1156 | PANTHER | UBIQUITIN-PROTEIN LIGASE E3C | 3 | 1156 | IPR044611 | GO:0000209|GO:0061630 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bpe04g01555 | Bpe04g00706 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g01555 | Bpe-Chr4:21883132 | Bpe05g00808 | Bpe-Chr5:21390969 | 4.42E-94 | dispersed | |
| Bpe04g01555 | Bpe-Chr4:21883132 | Bpe12g00120 | Bpe-Chr12:857089 | 8.26E-22 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe04g01555 | K10588 | - | zju:107432043 | 1509.2 |