Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01557 ATGGCGGTCTCTCCGACGGCGTCCTCAAACTTACTTTCGCTTTACGTTGGTGATCTTCGTCCCGACGTCACGGAGGAGATTCTTCGTGATGCTTTCTCCCAATACGAGAGCCTCGCCTCGGTTCGTGTCTCCAGGGACTCTGCTACTGGAAGATCCCTCTGTTACGGTTACGTCAATTTCATTGCTCATCAAGATGCAACCAACGCTCTCCGGGAAAAGAATCACAGTATTTTGAATGGAAAAATGATGAGAGTCATGTGGTCGCATCGTGATTCTGATGCAAGGAAAAGTGGAATTGGCAATGTGTTTGTCAAGAACTTGAGTGATTCGGTCAATAATATGGAGCTTGAAGAAATGTTTGGTCGTTTTGGAAATATTGTCTCCTGCAAAGTTCCCATGACTGAGGATGGGAAGAGCAGATGTCACGGCTTTGTACAGTTTGAGTCAGAAAATTCTGCAACTGCTGCTATTGAGATGTTAAATGGCTTAAATATAGATGGGAAGCAAATCTATGTTGGAAAGTTCATCAAGAAAATCGACCGAGTTATGGCTACTGGCACTGGCACTAAATTTACAAATTTGTATGTGAAGAATTTGGATCCAGAAATTGGGGAGGAGCTTCTGCATACAAAGTTTTCGGAGTTTGGAAAAATTGCTAGCTTGGTTATTGCGAAGGATGACAATGGAATATCTAAAGGTTTTGGGTTTATAGACTTTGATAACTCTGATGATGCTAAGCATGCAATGGAAGTGATGAACGGATCACAAGTTGGTTCAAAGGTTCTCTATGTCGCAAGGGCACAGAAGAAGACAGAGCGCCAACAAATGTTACGCAGACAGTTTGAAGAAAAGTGCAAGGACCAACACAAGGGCTTAAATGTGTATGTAAAGAATATCAATGATGATGTCACGACTGAAGATCTCGCAAAACATTTCAGTCAGTGTGGCACAATTACTTCAGCAAAAATTATGCAGAATGACAAAGGAATAAGCAAAGGGTTTGGATTTGTTTGCTTCTCTTGTCAGGAGGAGGCAAATAGAGCAGTGAACACCTTTCATGGACATATGCTTCAAAACAAGCCGTTGTATGTGGCTCTTGCTCAAAGAAAAGAGGAAAGACAAACTCAACTGCAACATCATTTTGCTCAGCGTATAGCTGGACTAGTTGCTGGCGGATATCCTTCCTACTACTACACATCTCCTCTTGGTGTTCTTCCAGCTCCACCTACGCCACAGAGACCAGGCCTGATGTATCGATCTTTACGGTTAAGGCCAGGATGGAGGTCCAATGGCTTTGCTTCTCCAATTAGACCAAGCTTTCAACCATTACCTGGCCCTCTTGCTTCTTTTTCACAGATTCCAAGACCAGGTATGCAGAACAGGGTGAGGTCGAACGGCCAAATGGTTGCTCAAAATAACGCTCACGCTGGTTCGTATAAACAAAATTTCCAGCAACAAAATCAATCTGTGATTCCTTCCAACGATTCAGGCTTTAATCAGGTTATGTGCCAGGTTCCTTTACTACAGAATGGACAGTCTCATTATACCCGTTCCAAAACAGCTGGAGCTGGATCAGAGGACTCAGTGGTACTGAGCTGTAAGCTTGCTGCTGCTTCTCCTGATCAACAGAAACAAATACTTGGGGATCGTCTCTATCCACTAGTCGAAAATTATAAGCCGGATCTTGCTGCAAAAATTACAGGAATGCTTCTGGAGATGGACATCGTGGAATTGCTACACTTATTGGAGTCACCCGAGTCGCTGGCTGCCAAAGTAGATGAAGCTATCCAAGTTCTGAAGATGTCAAATACCAAAGTATCGAGCCAAGACTCAGTTCACAACTCCAGTTTTCTATCAACTGAGGTTGCTGTCAATTGA 1878 43.4 MAVSPTASSNLLSLYVGDLRPDVTEEILRDAFSQYESLASVRVSRDSATGRSLCYGYVNFIAHQDATNALREKNHSILNGKMMRVMWSHRDSDARKSGIGNVFVKNLSDSVNNMELEEMFGRFGNIVSCKVPMTEDGKSRCHGFVQFESENSATAAIEMLNGLNIDGKQIYVGKFIKKIDRVMATGTGTKFTNLYVKNLDPEIGEELLHTKFSEFGKIASLVIAKDDNGISKGFGFIDFDNSDDAKHAMEVMNGSQVGSKVLYVARAQKKTERQQMLRRQFEEKCKDQHKGLNVYVKNINDDVTTEDLAKHFSQCGTITSAKIMQNDKGISKGFGFVCFSCQEEANRAVNTFHGHMLQNKPLYVALAQRKEERQTQLQHHFAQRIAGLVAGGYPSYYYTSPLGVLPAPPTPQRPGLMYRSLRLRPGWRSNGFASPIRPSFQPLPGPLASFSQIPRPGMQNRVRSNGQMVAQNNAHAGSYKQNFQQQNQSVIPSNDSGFNQVMCQVPLLQNGQSHYTRSKTAGAGSEDSVVLSCKLAAASPDQQKQILGDRLYPLVENYKPDLAAKITGMLLEMDIVELLHLLESPESLAAKVDEAIQVLKMSNTKVSSQDSVHNSSFLSTEVAVN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21907849 21911689 - Bpe016278.1 Bpe04g01557 103366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01557 625 PANTHER RNA BINDING PROTEIN 12 609 - -
Bpe04g01557 625 Pfam Poly-adenylate binding protein, unique domain 535 599 IPR002004 GO:0003723
Bpe04g01557 625 Gene3D - 101 183 IPR012677 -
Bpe04g01557 625 PANTHER POLYADENYLATE-BINDING PROTEIN 12 609 - -
Bpe04g01557 625 CDD RRM1_I_PABPs 13 91 - -
Bpe04g01557 625 SUPERFAMILY RNA-binding domain, RBD 290 392 IPR035979 GO:0003676
Bpe04g01557 625 SMART poly_2 539 602 IPR002004 GO:0003723
Bpe04g01557 625 Gene3D - 527 620 - -
Bpe04g01557 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Bpe04g01557 625 Gene3D - 184 277 IPR012677 -
Bpe04g01557 625 SMART rrm1_1 293 365 IPR000504 GO:0003723
Bpe04g01557 625 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bpe04g01557 625 SMART rrm1_1 193 265 IPR000504 GO:0003723
Bpe04g01557 625 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bpe04g01557 625 SUPERFAMILY RNA-binding domain, RBD 13 176 IPR035979 GO:0003676
Bpe04g01557 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Bpe04g01557 625 SUPERFAMILY PABC (PABP) domain 483 613 IPR036053 GO:0003723
Bpe04g01557 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bpe04g01557 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Bpe04g01557 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Bpe04g01557 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Bpe04g01557 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bpe04g01557 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bpe04g01557 625 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bpe04g01557 625 SMART rrm2_1 193 265 IPR003954 GO:0003676
Bpe04g01557 625 SMART rrm2_1 293 365 IPR003954 GO:0003676
Bpe04g01557 625 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bpe04g01557 625 SUPERFAMILY RNA-binding domain, RBD 190 280 IPR035979 GO:0003676
Bpe04g01557 625 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 604 IPR002004 GO:0003723
Bpe04g01557 625 Gene3D - 4 100 IPR012677 -
Bpe04g01557 625 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 600 IPR006515 GO:0003723
Bpe04g01557 625 Gene3D - 278 382 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01262 Bpe04g01557 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01557 Bpe-Chr4:21907849 Bpe15g00903 Bpe-Chr15:18896488 4.06E-21 dispersed
Bpe03g01262 Bpe-Chr3:31206619 Bpe04g01557 Bpe-Chr4:21907849 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01557 K13126 - csin:114306940 743.421