Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01561 ATGAAACGCGAGTTGGCGTTTGCATTGGAGGTTCAATCCCAGCTGGATGAGTCGCTCGGTCCAACTCAGACGGATACGCATGGGAGTGATTGTATGGGTGATGCTTCTCAGAATGGTTTCTGTAAGAGATTTAAAGGCTCAGTGGTTAACGGTTTGATTGTTTATACGAGGGAAAGGAGGTCCCAGATCAATTTGTGTAATGGCTTTTCTGCGAATGAGGAAAGCCAGAAAAGCAGTAGCTTAGAGGAGCTCGAGATCGGTGGGAAGTCTTCGATCGAAGAAGTAAACAAGATCGAAGAGGTTGAAACATTAGTTATTAAAGAACACCGCAGCAATTTAGAAATTCCCATTTGTGAAAATGTGCGAGAGAGTCCGGCGCTCAAATCTCCGGTGAAAAGAGAAGCCGAGGAGGCTGCGGTGGAAAGGGCTGATGATGGAGTGGCAAAGAAAGATTTGCCAGGAAAGGCCGGTAGGCGGTTTACAAGATCTTCATCGAGGCCCAAGCTCGAGCTAACAGAGACCTCTGCGGAGAAAACAGGGACGACTGTTGAAGAAGAAGACATTTTGGGTATGGACGTAGAGACATCTACTCCGAAGTATCAGGTGGAAATGAGGATGGTGAAAAGGTCTGCATCGAGTAAGAGGTTAATGACAGTGAGGGAGCTATTTGATACTGGTTTTCTGGAAGGAGTACCTGTTGTATATATGGGTACAAGGAAGGGGATCGATTATGGTCTGCGTGGGACTATTAAAGATGGTGGGATTTTATGCACATGCCTGTCCTGTAATGGAAGCAAGGTTATTACTCCATCCAAATTTGAGATTCATGCTTGCAAACAATACAAACGAGCAGCACAGTATATATGCCTCGAAAATGGTGCGAGCCTATTAGATTTGCTGAAGGCATGCAGGGGAAACGCCATGCATAAACTGGAGGCAACGATTCAAAAGGTGGTCAATTCTTCATCGGAAGAGAAAAATTTCACTTGTAGAAGTTGTAAAGGATGCTTTCGTGCATCATGGGTAGCGCAAGTTGGAGCTTTATGCTCTTCATGTGCAGAGTCAAACGAATCGGAGTCCACCCCTACCCCCCAAACGCCACCGCCTTCTGCAACTGATAAGAGGCCCAGGACTTCCAAGGATATAAAAAAAAAGGGAGTGAAATGTCTCCCATTTGAATTAGATTCTGCAACAGCTAGGTTACTTATTACCATTTCAATATGCTTTCAACTGTTGTTTAGGACATCAAAGCGAGATCTGACCTCAAAGTCCTCAAAGAGTGCTCCACCGCGTATCCGAACACAAAAAGGGAGCTCTTGGAAGATAAAAAAAAGGTTGTGTAATGTCATTAGATTAGAAGAAGAAAGTAATCATAACATTCCTTTATTTGTTAGGATGGTGCCAGATTTCATGTTGAAATCCACAAAAAGCACTCCAAAGTCCATCACTTCACAAATCAAAAGTCAATGGAAGATAACAACAAAAGATCAACGGTTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGAAGGAACTGAATTAGCATATTTTGCTCGGGGACAGGTACTTGAGATAATTATTATATATGCTCTATCTATGATTTTCAATTTATTTTTTAAATTAACTCCTTGTTATGAACAGAAATTGCTCCAAGGTTACAAGAAGGGTTCAGGAATTTTTTGCTTTTGCTGCAACTGTGAGGTTAGTCCTTCTCAATTTGAAGTTCATGCTGGTTGGTCGTCTCGGAAAAAACCCTATGCATACATTTATACGTCAAATGGGGTGTCTCTCCATGAATTAGCAATCTCCCTCTCAAAAGGCAGAAAATTTTCCGCCAGTGATAATGATGATGTATGCATTATATGTCTAGATGGTGGGGATCTTCTACTCTGTGATGGTTGCCCAAGGGCTTTCCACAAAGAATGTGCATCTCTACCGAGTATTCCTCGTGGCGATTGGTATTGTAAATTTTGCGAGAATATGTACCAAAGAGATAAATTTGTAGAGTACAATGAAAATGCTGTTGCTGCGGGAAGGATTTCTGGAGTTGATCCCATAGATGATATATCCAAAAGATGTATTCGAATAGTAAAAAATATCGAAAGTGAACTTAGTGGATGTGTGTTATGCCGCTATCTATTTTACACTTGGGAGTTGTGCTTCCATAATTTTTCTCAAATACTTTTTTACACATCTGTTCCGAATATATTTTCGTGCAGAGGGTCGGATTTTAGCAAATCCGGATTTGGTCCTTGGACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCATGTTGGCTGTTTGAAGGAGCATAAAATGGCGTTTCTTGAGGAACTACCAAAAGGGAAGTGGTTTTGTGGGCCAGATTGCACTAGGATACATTCTGCTCTGCGGAAGCTGCTCGTTCACGGAGAAGAGAAGGTTCCAGATTCCCTCCGAAGTGTTACCAACAAGAAGTTATTGGAAAAAGGCTTAGGTCCTGGAAATGATATCGATGTCAGATGGCGGCTTATCAGTGGAAAAATTGCTTCGCCCGAAACTAGGCCTCTACTCTCAGAAGCTGTTGCAATCTTCCACGATTGCTTTGATCCAATAATCGATATAACAAGTGGACGCGACCTCATCCCAGCTATGGTTTACGGAAGGGACGTTGGGGGGCTAGAGTTTGGGGGAATGTACTGTGCCATTTTAATGGTCAACTCATCTGTTGTATCGGCTGCAATGCTTCGAGTTTTCGGCCAAGAAATTGCAGAACTACCTTTAGTTGCAACCAGCAATGTAAATCGGGGAAAGGGTTATTTCCAAATATTGTTCTCCTGTATTGAGAGGCTACTTGCTTACTTACAAGTGAAGAACCTTGTCCTCCCGGCCGCCGAGGAAGCAGAGTCCATTTGGACTGATAAATTCGCTTTCGAGAGAATCAAAGCCGACGAGCTTAGCAATTACAGAAGAATTTGCTACCAAATGGTGATATTCAAAGGGACATCCATGCTTCAGAGAGCAATCTCATCGTCCTCAGCCATTGCCGTCCTCTCCATCGTCATCTCCTTCTCCATTGCCCCTCCTCGCAGCTTTAAGCTTGCTATTTACCAAGCAGCAGGACTGCTGGATAAAAATGGGGTGGAAGACTTTCTCTCTCTGATAACTCAGACTGTCTCTGCTCGACACCATCACCGGAGAAAGCCGAAAAGAAAATGCGACAAAACAAGGTGGAAATCTCCGATCATATCCGTCTATGATGTTGCTCTCATCTTTACCGTCGACTTGAAGGGTTGTGCTAATTTTAGCAGCGTGCAGAAGGCAGTAGATTCTGTTCCTGAGTACAGCAATTCTAGGACCCTCATCTTAATAGATTCAGGCTCTTACAGGGAGAAAGTGGTGGTTCAGGCTAACAAAACAAACGTAATTTTTCAAGGAAAAGGTTATTTAAACACAGAAATAACTTGGAATGATACAGCAAATTCTACCGGAGGAACGGTTTATAGTTCTTCTGTAGCAGTTTTTGCTCCTAATTTCACTGCATTTAACATTAGCTTTAAGAATACTGCTCCGTCGCCGTTGCCCGGAATAGTTGGAGGCCAAGCAGTGGCGCTCCGGATTGCCGGAGACCAATCTGCGTTTTACGGGTGTGGATTTTATGGAGCTCAAGATACTCTAAACGACGATCATGGGAGGCATTACTTCAAACAGTGCTTCATCGAAGGATCCATCGATTTCATTTTTGGAAACGGCAGATCAATCTACGAGGACTGCTCTATAAATTCAGTGGCGAAACCAGTTTCCGATGGGGTTAGTGGAGCTATTACTGCTCAGGCGAGGCAGTCCATCGGCGACCAAAGTGGGTTTTCGTTTGTGAACTGCTTTATCAATGGAAGTGGGAAGGTTTGGCTGGGCAGAGCTTGGGGACCGTACGCGACGGTGGTGTTTTCCAACACCTACATGTCGGAGGTTGTTTCTTCCGATGGCTGGAATGACTGGAGAGACCCTTCTAGAGACGAGACGGTGGTGTTCGGAGAGTACGGATGCATCGGACCTGGAGCTAATTACACGTACAGGGTGTCGTATGGAAAGCAACTGAATCAAACGGAAGCAACTCCTTATCTTGACATTTCTTACATCAACGGCGACAAATGGTTGATTCCTCATCAGAATCTTTCATCTTCTTCAATCATTTCCGATGTCCACCGTCCATTTATGGAGAATCTTCTTCATTCTTTCTACCTCTTCGATAAGATTTGA 4245 43.49 MKRELAFALEVQSQLDESLGPTQTDTHGSDCMGDASQNGFCKRFKGSVVNGLIVYTRERRSQINLCNGFSANEESQKSSSLEELEIGGKSSIEEVNKIEEVETLVIKEHRSNLEIPICENVRESPALKSPVKREAEEAAVERADDGVAKKDLPGKAGRRFTRSSSRPKLELTETSAEKTGTTVEEEDILGMDVETSTPKYQVEMRMVKRSASSKRLMTVRELFDTGFLEGVPVVYMGTRKGIDYGLRGTIKDGGILCTCLSCNGSKVITPSKFEIHACKQYKRAAQYICLENGASLLDLLKACRGNAMHKLEATIQKVVNSSSEEKNFTCRSCKGCFRASWVAQVGALCSSCAESNESESTPTPQTPPPSATDKRPRTSKDIKKKGVKCLPFELDSATARLLITISICFQLLFRTSKRDLTSKSSKSAPPRIRTQKGSSWKIKKRLCNVIRLEEESNHNIPLFVRMVPDFMLKSTKSTPKSITSQIKSQWKITTKDQRLHKLVFEEGGLPEGTELAYFARGQVLEIIIIYALSMIFNLFFKLTPCYEQKLLQGYKKGSGIFCFCCNCEVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKFSASDNDDVCIICLDGGDLLLCDGCPRAFHKECASLPSIPRGDWYCKFCENMYQRDKFVEYNENAVAAGRISGVDPIDDISKRCIRIVKNIESELSGCVLCRYLFYTWELCFHNFSQILFYTSVPNIFSCRGSDFSKSGFGPWTIILCDQCEKEFHVGCLKEHKMAFLEELPKGKWFCGPDCTRIHSALRKLLVHGEEKVPDSLRSVTNKKLLEKGLGPGNDIDVRWRLISGKIASPETRPLLSEAVAIFHDCFDPIIDITSGRDLIPAMVYGRDVGGLEFGGMYCAILMVNSSVVSAAMLRVFGQEIAELPLVATSNVNRGKGYFQILFSCIERLLAYLQVKNLVLPAAEEAESIWTDKFAFERIKADELSNYRRICYQMVIFKGTSMLQRAISSSSAIAVLSIVISFSIAPPRSFKLAIYQAAGLLDKNGVEDFLSLITQTVSARHHHRRKPKRKCDKTRWKSPIISVYDVALIFTVDLKGCANFSSVQKAVDSVPEYSNSRTLILIDSGSYREKVVVQANKTNVIFQGKGYLNTEITWNDTANSTGGTVYSSSVAVFAPNFTAFNISFKNTAPSPLPGIVGGQAVALRIAGDQSAFYGCGFYGAQDTLNDDHGRHYFKQCFIEGSIDFIFGNGRSIYEDCSINSVAKPVSDGVSGAITAQARQSIGDQSGFSFVNCFINGSGKVWLGRAWGPYATVVFSNTYMSEVVSSDGWNDWRDPSRDETVVFGEYGCIGPGANYTYRVSYGKQLNQTEATPYLDISYINGDKWLIPHQNLSSSSIISDVHRPFMENLLHSFYLFDKI 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21946348 21956332 + Bpe016282.2 Bpe04g01561 103370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01561 1414 Pfam PHD-finger 620 661 IPR019787 -
Bpe04g01561 1414 PANTHER AUTOIMMUNE REGULATOR 740 1008 - -
Bpe04g01561 1414 PANTHER AUTOIMMUNE REGULATOR 1 524 - -
Bpe04g01561 1414 PANTHER AUTOIMMUNE REGULATOR 548 713 - -
Bpe04g01561 1414 ProSiteProfiles Zinc finger PHD-type profile. 617 662 IPR019787 -
Bpe04g01561 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 693 IPR013083 -
Bpe04g01561 1414 Gene3D - 1082 1388 IPR012334 -
Bpe04g01561 1414 SUPERFAMILY FYVE/PHD zinc finger 754 793 IPR011011 -
Bpe04g01561 1414 CDD PHD1_AIRE 620 659 - -
Bpe04g01561 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 738 795 IPR013083 -
Bpe04g01561 1414 MobiDBLite consensus disorder prediction 128 157 - -
Bpe04g01561 1414 MobiDBLite consensus disorder prediction 128 182 - -
Bpe04g01561 1414 ProSitePatterns Pectinesterase signature 2. 1235 1244 IPR033131 -
Bpe04g01561 1414 SUPERFAMILY FYVE/PHD zinc finger 612 662 IPR011011 -
Bpe04g01561 1414 MobiDBLite consensus disorder prediction 356 380 - -
Bpe04g01561 1414 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 548 713 - -
Bpe04g01561 1414 Pfam Tify domain binding domain 248 303 IPR032308 -
Bpe04g01561 1414 Pfam Tify domain binding domain 553 603 IPR032308 -
Bpe04g01561 1414 ProSitePatterns Zinc finger PHD-type signature. 620 659 IPR019786 -
Bpe04g01561 1414 SMART PHD_3 619 660 IPR001965 -
Bpe04g01561 1414 SMART PHD_3 739 793 IPR001965 -
Bpe04g01561 1414 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 740 1008 - -
Bpe04g01561 1414 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 524 - -
Bpe04g01561 1414 Pfam Pectinesterase 1089 1378 IPR000070 GO:0030599|GO:0042545
Bpe04g01561 1414 SUPERFAMILY Pectin lyase-like 1083 1381 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00562 Bpe-Chr1:3657535 Bpe04g01561 Bpe-Chr4:21946348 2.97E-91 dispersed
Bpe04g01561 Bpe-Chr4:21946348 Bpe04g01608 Bpe-Chr4:22254873 1.66E-12 dispersed
Bpe11g01448 Bpe-Chr11:10736119 Bpe04g01561 Bpe-Chr4:21946348 1.08E-60 dispersed
Bpe13g00425 Bpe-Chr13:11869794 Bpe04g01561 Bpe-Chr4:21946348 6.94E-06 dispersed
Bpe13g00699 Bpe-Chr13:13605771 Bpe04g01561 Bpe-Chr4:21946348 2.24E-66 dispersed
Bpe05g00576 Bpe-Chr5:19865024 Bpe04g01561 Bpe-Chr4:21946348 1.40E-79 transposed
Bpe09g00075 Bpe-Chr9:528645 Bpe04g01561 Bpe-Chr4:21946348 3.27E-123 transposed
Bpe01g00222 Bpe-Chr1:1349646 Bpe04g01561 Bpe-Chr4:21946348 4.93E-22 wgd
Bpe03g01270 Bpe-Chr3:31248322 Bpe04g01561 Bpe-Chr4:21946348 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21352 PF01095 Pectinesterase 9.70E-64 CL0268 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01561 - - cpep:111800114 1084.71