Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01583 ATGATACCCAGTAATGTTTTTTCTGTACCCACTCCCATAGGAGCCTTCTCCCAAGAACACCACTCAAACCCTAATCCCAAACCTAATGCCAATCCAGTCGTTAGGAAGAAGAGGAATCTCCCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCAAAGAGCCTCATGGCGACAAACAGATTCATCTGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAATTTGCAGCTTCACAGAAGAGGTCACAACCTCCCATGGAAGCTCCGGCAGAGGACGAACAAAGAAGTGCGGAAGAAGGTCTACATTTGCCCGGAAGAATCTTGCGTCCACCATGACCCGTCCCGAGCTCTCGGCGACCTCACCGGAATAAAAAAGCATTTCAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGTGCTAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCACTCTAAAACCTGCGGAACAAGAGAGTACAAATGCGACTGCGGCACTCTCTTCTCCAGGAAAGATAGTTTCATCACCCACAGGGCGTTTTGCGATGCATTAGCTGAAGAAAGTACGAGATTTTCTTCGGTTTCAGCCTCAAATCTAAGTTTCAGAAACGAAACAGTAGATGAAACTCTGATCGATTCTCAACCCAGTTTGAATCAGGGGTTTTCTAGTCATCAAGGAGTTCAAGATGTTTCTGGAATTTCCCAATTCGGATCTGATTTTCTCCGAGATTTCAACGAAATGGCTTCGGCAAATTCCCTCGGTTCAGATCAGAACAAGACCAGATTGTCACTTTGGATGAATCAAGCCAACGCTCAGCTTAATCCAATGGAAGCAGCCGCAAATGCTAATCTTTTCGGATTATCTTCGCCGTCGACTTTTCCGGAGATGGTTCATATGCCGCCGTCGAATCTTTTTGGCGGTCTGCCTCTTTCGAATTTCGGAATGTCTAATCAATATCTGGGCTTGAGCAAAAATGCTAATCTTTCTGCAGATTCTAAAAACCCAAGTCGTTCTTTATCTCAAGTCGGAGAATCAAAAGAAGAAGGCGTGAACAAAGGAAATATGGTTGAATCTTTGTCTTTTTATTCAGATTCTCAAACTCAGAACAAACCATCAAAACCAGCTCCGCCAATGTCAGCAACTGCACTTTTGCAGAAAGCAGCTCAAATGGGTTCTACAAGAAGCAACCCGTCAATCATTCCAAACTGCAGCTTAGGAGTAATGAGTTCATCGTCTACATCAAGTCTCAATCCAATTACAAAACCCGTCTTTCAAAGTACAAAACAGCCGGCCATGGCGAACTGCGACGGTTTAGATCAGATTATGATGCAAACGAGCGGAGTAAAGCAAAAAGAAGCAGCGGGGTTGTGCTCTAATGGGATCGGAAATGGCTTCACGAGGGACTTTCTCGGAGTGGGAGTTAAAGAAGGTCATCATCGGCCATTCTCAGCCCAGGAGCTAGCCAAGTTATCCGGCATGAGCTCCGCCTCCTCCGCCGGTTTGAGCCATTTTAGCGTCAATCGGTGA 1539 45.48 MIPSNVFSVPTPIGAFSQEHHSNPNPKPNANPVVRKKRNLPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEESCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCAKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRFSSVSASNLSFRNETVDETLIDSQPSLNQGFSSHQGVQDVSGISQFGSDFLRDFNEMASANSLGSDQNKTRLSLWMNQANAQLNPMEAAANANLFGLSSPSTFPEMVHMPPSNLFGGLPLSNFGMSNQYLGLSKNANLSADSKNPSRSLSQVGESKEEGVNKGNMVESLSFYSDSQTQNKPSKPAPPMSATALLQKAAQMGSTRSNPSIIPNCSLGVMSSSSTSSLNPITKPVFQSTKQPAMANCDGLDQIMMQTSGVKQKEAAGLCSNGIGNGFTRDFLGVGVKEGHHRPFSAQELAKLSGMSSASSAGLSHFSVNR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22108697 22110718 - Bpe016303.1 Bpe04g01583 103392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01583 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bpe04g01583 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 498 - -
Bpe04g01583 512 PANTHER ZINC FINGER PROTEIN JACKDAW 5 498 IPR033243 GO:0003700
Bpe04g01583 512 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bpe04g01583 512 MobiDBLite consensus disorder prediction 1 38 - -
Bpe04g01583 512 MobiDBLite consensus disorder prediction 331 355 - -
Bpe04g01583 512 SMART c2h2final6 137 157 IPR013087 -
Bpe04g01583 512 SMART c2h2final6 102 132 IPR013087 -
Bpe04g01583 512 SMART c2h2final6 61 83 IPR013087 -
Bpe04g01583 512 Gene3D Classic Zinc Finger 42 112 - -
Bpe04g01583 512 MobiDBLite consensus disorder prediction 331 351 - -
Bpe04g01583 512 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bpe04g01583 512 Gene3D Classic Zinc Finger 115 194 - -
Bpe04g01583 512 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Bpe04g01583 512 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01583 Bpe-Chr4:22108697 Bpe08g01328 Bpe-Chr8:14495662 2.32E-113 dispersed
Bpe11g00832 Bpe-Chr11:6202693 Bpe04g01583 Bpe-Chr4:22108697 8.77E-24 dispersed
Bpe04g01583 Bpe-Chr4:22108697 Bpe06g00780 Bpe-Chr6:18046584 3.44E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21353 PF12171 zf-C2H2_jaz 7.50E-05 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01583 K25870 - jre:109011162 573.548