Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01589 ATGGGAAGGAAGGGAAATTGGTTTTCTTCTGTAAAGAAAGCTCTCAGCCCTGAGGCCAAAGAGAAGAAAGATCAGAATTCCAAATCGAAGAAGAAATGGTTTGGAAAACAAAAACTGTTCGATCTGGAATCTACACCCTTGGAGAATGTCGCTGCCCCTCCTCCTCTCCAGCCAGAAGATGTGAATTTAAGCAGTGTTGTCAACGAAGAGAGTGATTGTGCTTGCTCGGTTGAAGTTCCTATGGCTCCAACAGTGACAACGTTGGCTGCCGAAACTGAAGTTGCTGCCACTGAGAATGTTCCAGACGTCAACCAACCAGCCTCGAAAGCTCAATTTATTGGAAAATCGAGGGAAGAAGTGGCGGCGATCAAGATTCAAACGGCATTTCGAGGATATCTGGCAAGAAGGGCATTGCGGGCTTTAAGAGGATTGGTGAGGCTTAAAACATTGATGGAAGGTTCGGTTGTGAAACGCCAAACTGCAAATACTCTTCGATGCATGCAAACCCTTTCTCGAGTTCAGTCTCAAATTCGTTTCAGGAGGATCCGGATGTTAGAAGAGAATCAAGCTCTTCAAAAACAACTTCTACAAAAACACGCTAAAGAGCTGGAGAATTTTCGGATGGGGGAGGAATGGGATGACAGCCTGCAGTCAAAGGAGCAAATTGAAGCTAATCTACTAAGCAAATATGAGGCTGCTATGAGAAGAGAGAGAGCATTGGCTTATTCATTCTCCCATCAGCAAACCTGGAAAAATTCTTCAAGATCTGTAAATCCAATGTTTATGGATCCAAGCAATCCCACCTGGGGTTGGAGCTGGTTAGAACGATGGACGGCAGCCCGTCCATGGGAAAATCGGGAAGAAAAGGAGCAGAATAACGAGAACTCATCTGTAAAGAGCGTAAGGCGGGGCATTTCTCCAGGAGAGATAAGCAAGTCTTATACTAAATACCAACTAAATGCTGAAACAAACTCCCCCACGGCTAGTGTAAAGGCAAGCAATTCAACTTTCGAGTCCCCTTTGACTCCTTCCAAGCCTGCATTGCCTGTATCAACTAGAAAAATGAAGCCCCCCAGCCCGAGAAGTGGCTTGGGTCTAGAAGATGACTCGAAGAGCATAGCTAATTTGCAGTCAGAACGTGTTCGAAGGCATAGCATGGGTGCGGGATCAGTGAGGGACGATGAGAGTATAGCTAGCTCTTCGGCCATGCCTAGCTACATGACCCCAACTGAATCTGCAAGAGCCAAATCCAAATCACAAAGCCCTTTCGCGATAGAGAAGGCCGAAACAGTAGAAAAAGTATCACCAATCCCCACTAAGAAGCGACTTTCATTTACGACTTCTCCCGCCCAACCAAGGCGGCTCTCTGGTCCGCCGAAGATCGAAAGCCGCTTCAACGCAGAAGCCCAAGTAGGCAATGGTGTGAGTGCG 1431 46.82 MGRKGNWFSSVKKALSPEAKEKKDQNSKSKKKWFGKQKLFDLESTPLENVAAPPPLQPEDVNLSSVVNEESDCACSVEVPMAPTVTTLAAETEVAATENVPDVNQPASKAQFIGKSREEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGSVVKRQTANTLRCMQTLSRVQSQIRFRRIRMLEENQALQKQLLQKHAKELENFRMGEEWDDSLQSKEQIEANLLSKYEAAMRRERALAYSFSHQQTWKNSSRSVNPMFMDPSNPTWGWSWLERWTAARPWENREEKEQNNENSSVKSVRRGISPGEISKSYTKYQLNAETNSPTASVKASNSTFESPLTPSKPALPVSTRKMKPPSPRSGLGLEDDSKSIANLQSERVRRHSMGAGSVRDDESIASSSAMPSYMTPTESARAKSKSQSPFAIEKAETVEKVSPIPTKKRLSFTTSPAQPRRLSGPPKIESRFNAEAQVGNGVSA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22157407 22159512 + Bpe025702 Bpe04g01589 103398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01589 477 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Bpe04g01589 477 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 472 - -
Bpe04g01589 477 MobiDBLite consensus disorder prediction 322 346 - -
Bpe04g01589 477 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Bpe04g01589 477 SMART iq_5 117 139 IPR000048 GO:0005515
Bpe04g01589 477 MobiDBLite consensus disorder prediction 1 32 - -
Bpe04g01589 477 MobiDBLite consensus disorder prediction 285 304 - -
Bpe04g01589 477 MobiDBLite consensus disorder prediction 322 477 - -
Bpe04g01589 477 Gene3D iswi atpase 115 154 - -
Bpe04g01589 477 MobiDBLite consensus disorder prediction 15 32 - -
Bpe04g01589 477 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Bpe04g01589 477 MobiDBLite consensus disorder prediction 394 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01589 - - - qsu:111993140 527.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01399 Bpe-Chr4:20673544 Bpe04g01589 Bpe-Chr4:22157407 3.23E-17 dispersed
Bpe04g01589 Bpe-Chr4:22157407 Bpe04g01873 Bpe-Chr4:23845940 1.14E-131 dispersed
Bpe14g00792 Bpe-Chr14:6008693 Bpe04g01589 Bpe-Chr4:22157407 1.04E-21 dispersed
Bpe04g01589 Bpe-Chr4:22157407 Bpe04g00888 Bpe-Chr4:5949504 4.00E-37 transposed
Bpe04g01589 Bpe-Chr4:22157407 Bpe02g00495 Bpe-Chr2:3201970 8.55E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006173 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01589 Bpe_Chr04 FPKM 7.726769 8.531608 12.895015 12.282586 6.503896 5.938181 7.393268 0.640939 0.537977 0.525701