Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01596 ATGGACGTGAAAGAGGCAGAGAGAGTAGTTGTAGCCAAGCCAGTTGCTTCGAGGCCAACATGTTCTGGTTTTGGGTCCTTCTCGGAGCTTCTTGCTGGCGCCATTAATGCAGCTCCACCAAATATGATACCAGAAAATGCCGTTCCTGCCATTAGACCGAAAACAGTAAGGGTTAAGCCGACTGTAAATCGCCCACAATCAAGGCCAAATTCTTCCCAGGCAGAGATGGCGTGCACAGAAAACTATCAGTCATCCGATCAAGCATTGCAAGAGGATCATAAACCCTTTGTCGTATACAGACCATTAGCGAAATTCGTATCGAAGGCAACTGTTTCTCTCTTGGAAAACATGGTAAGTTCTTCAAATTGTTCGTTTTTAAAGAAAATGTTTTGTGGAAACTTCAATGCCCATGACAAGCAAGCACCAGCACCAGTTGAAGTGCAGCTTCAACACCAAGACCAGAATAAAAACAGCTTCAAATCCCAAACCAACTCAAATTATCAACCGAGCATCCCTTTTCACACCGAATCAGCTGAGACATCTAAGATTTCGTCACAGTTTGCAGAAGAGGATGCCAGATCGACATTACCTCCGAGCTGTGATCGCCCTTCTTACGATGGATACAATTGGCGAAAATACGGGCAAAAACAAGTCAAGGGAAGCGAGTACCCGAGGAGTTATTACAAATGCACGCACCCAAACTGTCCGGTAAAGAAGAAGGTCGAAAGATCATTAGATGGACAGATTGCAGAGATAGTTTATAAGGGCGAACACAATCACTCCAAGCCTCAGCCTCCTAAGCGCAACTCATCTGGAACTCAAGGGACCGGCTTGGCGCCTGAAGGAGCTGGGCAAATAACAGACGATCAGCCATACAGTAATAATGTGAATGAAGGTGTCCTAGGTAGAGTAGAAAACCAAAGTGAGGCTCAATTGCCTGCACATTTTTATCAACATTCCTATGATCCAATCGCAAATGAAGGTGGAGTTCCTGTTAGTTCATGCGGAGTGACAGGAGAATGCGAGGAAGGAAGCAAAGGAATAGGCATTGATGAGAATGAATCTAGGAGCAAGAGAAGGAAGGTAGAAAAACAATCTAGTGAAGTGAGCTTATTGGGATGCGAGAGCTCGCAAGAGCCTCAGATTTTGGTTCAGAACGCGACCGATACTGAGATGGTCGGAGATGGGTTTCGGTGGAGGAAATATGGGCAGAAGGTGGTGAAAGGAAATCCATATCCGAGGAGTTACTATAGATGTACCAGTCTCAAATGCAATGTGAGAAAGCATGTGGAGAGGGCGTCGGACGAACCAAGTGCGTTCATCACCACTTACGAGGGAAAGCACAACCACGAAATGCCACTCAGAAACAAAAACGCGGCCACATCTGAA 1389 45.79 MDVKEAERVVVAKPVASRPTCSGFGSFSELLAGAINAAPPNMIPENAVPAIRPKTVRVKPTVNRPQSRPNSSQAEMACTENYQSSDQALQEDHKPFVVYRPLAKFVSKATVSLLENMVSSSNCSFLKKMFCGNFNAHDKQAPAPVEVQLQHQDQNKNSFKSQTNSNYQPSIPFHTESAETSKISSQFAEEDARSTLPPSCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSLDGQIAEIVYKGEHNHSKPQPPKRNSSGTQGTGLAPEGAGQITDDQPYSNNVNEGVLGRVENQSEAQLPAHFYQHSYDPIANEGGVPVSSCGVTGECEEGSKGIGIDENESRSKRRKVEKQSSEVSLLGCESSQEPQILVQNATDTEMVGDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKHVERASDEPSAFITTYEGKHNHEMPLRNKNAATSE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22188185 22190068 + Bpe025703 Bpe04g01596 103405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01596 463 Pfam WRKY DNA -binding domain 395 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 Pfam WRKY DNA -binding domain 206 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 MobiDBLite consensus disorder prediction 255 297 - -
Bpe04g01596 463 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 456 - -
Bpe04g01596 463 MobiDBLite consensus disorder prediction 345 366 - -
Bpe04g01596 463 ProSiteProfiles WRKY domain profile. 388 453 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 SUPERFAMILY WRKY DNA-binding domain 387 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 MobiDBLite consensus disorder prediction 178 201 - -
Bpe04g01596 463 MobiDBLite consensus disorder prediction 343 371 - -
Bpe04g01596 463 ProSiteProfiles WRKY domain profile. 206 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 MobiDBLite consensus disorder prediction 265 280 - -
Bpe04g01596 463 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 456 IPR044810 GO:0003700
Bpe04g01596 463 SMART WRKY_cls 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 SMART WRKY_cls 393 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 MobiDBLite consensus disorder prediction 178 192 - -
Bpe04g01596 463 Gene3D WRKY domain 378 454 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe04g01596 463 Gene3D WRKY domain 195 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01596 Bpe-Chr4:22188185 Bpe11g00067 Bpe-Chr11:458552 5.41E-13 dispersed
Bpe03g01295 Bpe-Chr3:31461146 Bpe04g01596 Bpe-Chr4:22188185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21354 PF03106 WRKY 2.00E-25 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01596 - - pmum:103340389 563.533