Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01608 ATGGCAGACCAGCCTCTTTCTTCCGCGTTACTTACAGACCCGAAGGTGGCCATGGAAACAGAGACCCCAACCAGACCCGAATTGAAGCGCGAACATCAGTTCCTTGTAGAAGAGACAGACCCTGACTCCTTTTCCAGTAAGAGACAGACCAAAGAAGCTTCTACTGATGACATTCGCTCAGAGGTCTCTAACCCTGTTATTTCTCCCAAGGAAAATCACTCCAGTTTACTAGATATCTCTAGCCAACCTCCTGAGTTGGTTAGTGACCAAGTAGAGTGTGCAGACCTTGTCTCTGCTTGTTCTGCAAATTCTAGTGCGGAGGAGGCATCCAGCGGTAAAGAGATTGGTCGGAGTGACATGTGCCGAAATGATATTAACACATCTTGTCCAGCTCACATCTCACAATTTGTATTAGAAATTCCAAAGCATATCAGTTCCACTGGAGTTAGAAAAATTACGTTTAAGTTCAGCAAAAGAAAGGAGGACTATGACAATCACTTGTCTCTTTTGGCGCCTCGGACTGCTCTATACGGATATAATAATGGTAATTGGTCTGGCAGTTCTGAGGAGGACCATATTCTTGGAACTTCTTTATCAGATGAAACATATCTAGAGGCACCACCACACACATTGTTGCACTCGCGTGGACCTAATATGGAGATGAAAATGTCTAAGAAGGTCTTCCCGAGCAATTACCCAACAAATGTCAAAAAGCTGCTATCAACAGGTATTCTTGATGGAGCTAGAGTGAAGTATATTTCTACCACGTGCAAGATAGAGTTAGATGGAATTATAAATGGCGGTGGATATATGTGTGGATGCTCATCGTGCAACTTCTCATCTGTTCTCAGTGCTTATGAGTTTGAGAATCATGCTGGTGTTAAGACTAGACATCCTAATAATCATATATATCTTGAGAATGGGAGGCCAATTTACAGTGTAATTCAAGAAATAAAAAATGCTCCTGTCAGGTTGTTGGATGAAGTGATAAAGGATGTCGCTGGCTCATCGGTCAACATGGATTCACTTGAAGCTTGGAAAGCAAATTTCCTTCAAAATACTCCTAGAATTGATGGAGAGGCCGAACTTGATGACATCAGGCTTTTTAAATCTCCCTATCCTCCTATAAGATCAATCCCTTGTTTGTCTAAAACGATGGTGAAACAAAAGAAAACTGTTGAAGGAAGCGCAAAAAGAAGGGATAATGATCTACACAGGTTGCTTTTCATGCCAAATGGACTTCCAGATGGAGCTGAATTGGCATATTTTATTAAAGGGCAGAGAATTCTGGGTGGGTACAAGCAAGGAAATGGTATAGTTTGTAGCCATTGTGACAAAGAGGTTAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGTCATATTTATACTTCAAATGGGATTACACTGCATGATATAGCAATTTCATTGGCCAATGGGCAAAAGCTTACCACAGGAGACAGTGATGATATGTGTGCCGCATGTGGGGATGGAGGAGATCTTATATTTTGTGCTGGATGCCCTCGGGCTTTTCATACTGCTTGTTTGCAGTTACATTCAGCTCCTAATGGAGATTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTAACAGTAGGAAAACGTCTTCTGGAGATTCATCAAGCCTTGCGAAACCAATTGTTATACGTTTAACGCGAGTTGTCAAATCACCAGATTTTGAGATTGGTGGGTGTGTTGTTTGCAGGGGTCATGATTTTAGTGTTGCCAAGTTTGATGAACAAACTGTTATGATTTGCGACCAATGTGAGAGAGAGTTTCATGTTGGCTGTCTGCGCAGTAGTGGATTGTGTGATTTAAAGGAACTTCCGAAAGATAAGTGGTTCTGCTGTGACGACTGCAATAGGATCCATGTGGCTTTACAGAATATAGTTTTGAATGGTGCAGAGAGCATTCCAGCTTCATTGTCCAACTTAATAGCCAGAAAGCATATGGAGAAAGGGATATTTATTGATAGAACCATTAGCGATGTCCAATGGAGAATATTAAGTGGAAAAAGTCGCTATCCAGTAGATCTTCCATTACTTTCCAGGGTTGTGGCTATGTTTCGAGAGTGTTTTGATCCGATAGTTGCGAATTCTGGTCGTGATCTTATACCAGTTATGGTGTATGGGAGAAATATATCTGGTCAAGAGTTTGGGGGAATGTACTGCATCGTCCTAATTGTGGGGTCTGTAGTCGTATCTGCTGGTCTTCTTAGGATTTTCGGCCGCCAGGTTGCTGAGCTTCCTATAGTGGCGACGAGCAGAGAACATCAACGCAAAGGATATTTCCAAGTATTGTTCTCGTGCATAGAAAGACTACTTTGCTCCCTAAAAGTAGAAAATGTGGTGCTCCCAGCAGCTGAGGACGCGGAGTCAATTTGGACGAAAAAATTGGGTTTTAGACGAATGAGCGAGGATCAGTTGAAGAAGTATTTGAGGGAGGTGCAGTTGACGATATTTAAAGGCACATCCATGCTGGAGAAGGTGGTGGAGCGGACGGCAGAATGA 2550 42.63 MADQPLSSALLTDPKVAMETETPTRPELKREHQFLVEETDPDSFSSKRQTKEASTDDIRSEVSNPVISPKENHSSLLDISSQPPELVSDQVECADLVSACSANSSAEEASSGKEIGRSDMCRNDINTSCPAHISQFVLEIPKHISSTGVRKITFKFSKRKEDYDNHLSLLAPRTALYGYNNGNWSGSSEEDHILGTSLSDETYLEAPPHTLLHSRGPNMEMKMSKKVFPSNYPTNVKKLLSTGILDGARVKYISTTCKIELDGIINGGGYMCGCSSCNFSSVLSAYEFENHAGVKTRHPNNHIYLENGRPIYSVIQEIKNAPVRLLDEVIKDVAGSSVNMDSLEAWKANFLQNTPRIDGEAELDDIRLFKSPYPPIRSIPCLSKTMVKQKKTVEGSAKRRDNDLHRLLFMPNGLPDGAELAYFIKGQRILGGYKQGNGIVCSHCDKEVSPSQFEAHAGMAARRQPYRHIYTSNGITLHDIAISLANGQKLTTGDSDDMCAACGDGGDLIFCAGCPRAFHTACLQLHSAPNGDWCCPNCRDKVGNSRKTSSGDSSSLAKPIVIRLTRVVKSPDFEIGGCVVCRGHDFSVAKFDEQTVMICDQCEREFHVGCLRSSGLCDLKELPKDKWFCCDDCNRIHVALQNIVLNGAESIPASLSNLIARKHMEKGIFIDRTISDVQWRILSGKSRYPVDLPLLSRVVAMFRECFDPIVANSGRDLIPVMVYGRNISGQEFGGMYCIVLIVGSVVVSAGLLRIFGRQVAELPIVATSREHQRKGYFQVLFSCIERLLCSLKVENVVLPAAEDAESIWTKKLGFRRMSEDQLKKYLREVQLTIFKGTSMLEKVVERTAE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22254873 22266159 - Bpe016324.1 Bpe04g01608 103417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01608 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 562 IPR013083 -
Bpe04g01608 849 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 731 820 IPR016181 -
Bpe04g01608 849 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 685 844 IPR000182 GO:0016407
Bpe04g01608 849 MobiDBLite consensus disorder prediction 59 77 - -
Bpe04g01608 849 MobiDBLite consensus disorder prediction 20 58 - -
Bpe04g01608 849 ProSitePatterns Zinc finger PHD-type signature. 578 633 IPR019786 -
Bpe04g01608 849 ProSiteProfiles Zinc finger PHD-type profile. 496 541 IPR019787 -
Bpe04g01608 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 383 845 - -
Bpe04g01608 849 Pfam Tify domain binding domain 263 317 IPR032308 -
Bpe04g01608 849 Pfam Tify domain binding domain 432 481 IPR032308 -
Bpe04g01608 849 Gene3D - 691 844 - -
Bpe04g01608 849 PANTHER AUTOIMMUNE REGULATOR 383 845 - -
Bpe04g01608 849 Coils Coil 845 849 - -
Bpe04g01608 849 MobiDBLite consensus disorder prediction 1 77 - -
Bpe04g01608 849 SMART PHD_3 577 634 IPR001965 -
Bpe04g01608 849 SMART PHD_3 498 539 IPR001965 -
Bpe04g01608 849 PANTHER AUTOIMMUNE REGULATOR 43 355 - -
Bpe04g01608 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 636 IPR013083 -
Bpe04g01608 849 Pfam PHD-finger 498 540 IPR019787 -
Bpe04g01608 849 SUPERFAMILY FYVE/PHD zinc finger 494 542 IPR011011 -
Bpe04g01608 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 43 355 - -
Bpe04g01608 849 ProSitePatterns Zinc finger PHD-type signature. 499 538 IPR019786 -
Bpe04g01608 849 SUPERFAMILY FYVE/PHD zinc finger 575 631 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01608 - - - csv:101207817 1145.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00222 Bpe-Chr1:1349646 Bpe04g01608 Bpe-Chr4:22254873 0 dispersed
Bpe03g01270 Bpe-Chr3:31248322 Bpe04g01608 Bpe-Chr4:22254873 5.65E-13 dispersed
Bpe04g01561 Bpe-Chr4:21946348 Bpe04g01608 Bpe-Chr4:22254873 1.66E-12 dispersed
Bpe04g01608 Bpe-Chr4:22254873 Bpe05g00903 Bpe-Chr5:22054738 2.16E-45 dispersed
Bpe04g01846 Bpe-Chr4:23696497 Bpe04g01608 Bpe-Chr4:22254873 3.78E-40 dispersed
Bpe11g00475 Bpe-Chr11:3672293 Bpe04g01608 Bpe-Chr4:22254873 6.63E-38 dispersed
Bpe11g00777 Bpe-Chr11:5803817 Bpe04g01608 Bpe-Chr4:22254873 6.87E-44 wgd
Bpe15g01101 Bpe-Chr15:20165464 Bpe04g01608 Bpe-Chr4:22254873 2.58E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01608 . 45 849 PHD Transcription Factor Family AT3G53680 54.4 2.0e-248 855.5
Bpe15g01101 . 437 566 PHD Transcription Factor Family AT3G53680 54.6 2.6e-38 157.5
Bpe11g00777 . 306 445 PHD Transcription Factor Family AT3G53680 51.8 7.7e-38 156.0
Bpe04g01846 . 425 554 PHD Transcription Factor Family AT3G53680 53.1 3.2e-36 150.6
Bpe10g00969 . 10 625 PHD Transcription Factor Family AT5G22260 50.3 4.1e-175 611.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21355 PF16135 TDBD 1.70E-12 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01608 Bpe_Chr04 FPKM 14.995337 16.169027 12.736171 13.920077 20.433655 17.89456 20.937386 2.70396 3.243678 2.283421