Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01608 ATGGCAGACCAGCCTCTTTCTTCCGCGTTACTTACAGACCCGAAGGTGGCCATGGAAACAGAGACCCCAACCAGACCCGAATTGAAGCGCGAACATCAGTTCCTTGTAGAAGAGACAGACCCTGACTCCTTTTCCAGTAAGAGACAGACCAAAGAAGCTTCTACTGATGACATTCGCTCAGAGGTCTCTAACCCTGTTATTTCTCCCAAGGAAAATCACTCCAGTTTACTAGATATCTCTAGCCAACCTCCTGAGTTGGTTAGTGACCAAGTAGAGTGTGCAGACCTTGTCTCTGCTTGTTCTGCAAATTCTAGTGCGGAGGAGGCATCCAGCGGTAAAGAGATTGGTCGGAGTGACATGTGCCGAAATGATATTAACACATCTTGTCCAGCTCACATCTCACAATTTGTATTAGAAATTCCAAAGCATATCAGTTCCACTGGAGTTAGAAAAATTACGTTTAAGTTCAGCAAAAGAAAGGAGGACTATGACAATCACTTGTCTCTTTTGGCGCCTCGGACTGCTCTATACGGATATAATAATGGTAATTGGTCTGGCAGTTCTGAGGAGGACCATATTCTTGGAACTTCTTTATCAGATGAAACATATCTAGAGGCACCACCACACACATTGTTGCACTCGCGTGGACCTAATATGGAGATGAAAATGTCTAAGAAGGTCTTCCCGAGCAATTACCCAACAAATGTCAAAAAGCTGCTATCAACAGGTATTCTTGATGGAGCTAGAGTGAAGTATATTTCTACCACGTGCAAGATAGAGTTAGATGGAATTATAAATGGCGGTGGATATATGTGTGGATGCTCATCGTGCAACTTCTCATCTGTTCTCAGTGCTTATGAGTTTGAGAATCATGCTGGTGTTAAGACTAGACATCCTAATAATCATATATATCTTGAGAATGGGAGGCCAATTTACAGTGTAATTCAAGAAATAAAAAATGCTCCTGTCAGGTTGTTGGATGAAGTGATAAAGGATGTCGCTGGCTCATCGGTCAACATGGATTCACTTGAAGCTTGGAAAGCAAATTTCCTTCAAAATACTCCTAGAATTGATGGAGAGGCCGAACTTGATGACATCAGGCTTTTTAAATCTCCCTATCCTCCTATAAGATCAATCCCTTGTTTGTCTAAAACGATGGTGAAACAAAAGAAAACTGTTGAAGGAAGCGCAAAAAGAAGGGATAATGATCTACACAGGTTGCTTTTCATGCCAAATGGACTTCCAGATGGAGCTGAATTGGCATATTTTATTAAAGGGCAGAGAATTCTGGGTGGGTACAAGCAAGGAAATGGTATAGTTTGTAGCCATTGTGACAAAGAGGTTAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGTCATATTTATACTTCAAATGGGATTACACTGCATGATATAGCAATTTCATTGGCCAATGGGCAAAAGCTTACCACAGGAGACAGTGATGATATGTGTGCCGCATGTGGGGATGGAGGAGATCTTATATTTTGTGCTGGATGCCCTCGGGCTTTTCATACTGCTTGTTTGCAGTTACATTCAGCTCCTAATGGAGATTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTAACAGTAGGAAAACGTCTTCTGGAGATTCATCAAGCCTTGCGAAACCAATTGTTATACGTTTAACGCGAGTTGTCAAATCACCAGATTTTGAGATTGGTGGGTGTGTTGTTTGCAGGGGTCATGATTTTAGTGTTGCCAAGTTTGATGAACAAACTGTTATGATTTGCGACCAATGTGAGAGAGAGTTTCATGTTGGCTGTCTGCGCAGTAGTGGATTGTGTGATTTAAAGGAACTTCCGAAAGATAAGTGGTTCTGCTGTGACGACTGCAATAGGATCCATGTGGCTTTACAGAATATAGTTTTGAATGGTGCAGAGAGCATTCCAGCTTCATTGTCCAACTTAATAGCCAGAAAGCATATGGAGAAAGGGATATTTATTGATAGAACCATTAGCGATGTCCAATGGAGAATATTAAGTGGAAAAAGTCGCTATCCAGTAGATCTTCCATTACTTTCCAGGGTTGTGGCTATGTTTCGAGAGTGTTTTGATCCGATAGTTGCGAATTCTGGTCGTGATCTTATACCAGTTATGGTGTATGGGAGAAATATATCTGGTCAAGAGTTTGGGGGAATGTACTGCATCGTCCTAATTGTGGGGTCTGTAGTCGTATCTGCTGGTCTTCTTAGGATTTTCGGCCGCCAGGTTGCTGAGCTTCCTATAGTGGCGACGAGCAGAGAACATCAACGCAAAGGATATTTCCAAGTATTGTTCTCGTGCATAGAAAGACTACTTTGCTCCCTAAAAGTAGAAAATGTGGTGCTCCCAGCAGCTGAGGACGCGGAGTCAATTTGGACGAAAAAATTGGGTTTTAGACGAATGAGCGAGGATCAGTTGAAGAAGTATTTGAGGGAGGTGCAGTTGACGATATTTAAAGGCACATCCATGCTGGAGAAGGTGGTGGAGCGGACGGCAGAATGA 2550 42.63 MADQPLSSALLTDPKVAMETETPTRPELKREHQFLVEETDPDSFSSKRQTKEASTDDIRSEVSNPVISPKENHSSLLDISSQPPELVSDQVECADLVSACSANSSAEEASSGKEIGRSDMCRNDINTSCPAHISQFVLEIPKHISSTGVRKITFKFSKRKEDYDNHLSLLAPRTALYGYNNGNWSGSSEEDHILGTSLSDETYLEAPPHTLLHSRGPNMEMKMSKKVFPSNYPTNVKKLLSTGILDGARVKYISTTCKIELDGIINGGGYMCGCSSCNFSSVLSAYEFENHAGVKTRHPNNHIYLENGRPIYSVIQEIKNAPVRLLDEVIKDVAGSSVNMDSLEAWKANFLQNTPRIDGEAELDDIRLFKSPYPPIRSIPCLSKTMVKQKKTVEGSAKRRDNDLHRLLFMPNGLPDGAELAYFIKGQRILGGYKQGNGIVCSHCDKEVSPSQFEAHAGMAARRQPYRHIYTSNGITLHDIAISLANGQKLTTGDSDDMCAACGDGGDLIFCAGCPRAFHTACLQLHSAPNGDWCCPNCRDKVGNSRKTSSGDSSSLAKPIVIRLTRVVKSPDFEIGGCVVCRGHDFSVAKFDEQTVMICDQCEREFHVGCLRSSGLCDLKELPKDKWFCCDDCNRIHVALQNIVLNGAESIPASLSNLIARKHMEKGIFIDRTISDVQWRILSGKSRYPVDLPLLSRVVAMFRECFDPIVANSGRDLIPVMVYGRNISGQEFGGMYCIVLIVGSVVVSAGLLRIFGRQVAELPIVATSREHQRKGYFQVLFSCIERLLCSLKVENVVLPAAEDAESIWTKKLGFRRMSEDQLKKYLREVQLTIFKGTSMLEKVVERTAE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22254873 22266159 - Bpe016324.1 Bpe04g01608 103417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01608 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 562 IPR013083 -
Bpe04g01608 849 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 731 820 IPR016181 -
Bpe04g01608 849 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 685 844 IPR000182 GO:0016407
Bpe04g01608 849 MobiDBLite consensus disorder prediction 59 77 - -
Bpe04g01608 849 MobiDBLite consensus disorder prediction 20 58 - -
Bpe04g01608 849 ProSitePatterns Zinc finger PHD-type signature. 578 633 IPR019786 -
Bpe04g01608 849 ProSiteProfiles Zinc finger PHD-type profile. 496 541 IPR019787 -
Bpe04g01608 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 383 845 - -
Bpe04g01608 849 Pfam Tify domain binding domain 263 317 IPR032308 -
Bpe04g01608 849 Pfam Tify domain binding domain 432 481 IPR032308 -
Bpe04g01608 849 Gene3D - 691 844 - -
Bpe04g01608 849 PANTHER AUTOIMMUNE REGULATOR 383 845 - -
Bpe04g01608 849 Coils Coil 845 849 - -
Bpe04g01608 849 MobiDBLite consensus disorder prediction 1 77 - -
Bpe04g01608 849 SMART PHD_3 577 634 IPR001965 -
Bpe04g01608 849 SMART PHD_3 498 539 IPR001965 -
Bpe04g01608 849 PANTHER AUTOIMMUNE REGULATOR 43 355 - -
Bpe04g01608 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 636 IPR013083 -
Bpe04g01608 849 Pfam PHD-finger 498 540 IPR019787 -
Bpe04g01608 849 SUPERFAMILY FYVE/PHD zinc finger 494 542 IPR011011 -
Bpe04g01608 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 43 355 - -
Bpe04g01608 849 ProSitePatterns Zinc finger PHD-type signature. 499 538 IPR019786 -
Bpe04g01608 849 SUPERFAMILY FYVE/PHD zinc finger 575 631 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00222 Bpe-Chr1:1349646 Bpe04g01608 Bpe-Chr4:22254873 0 dispersed
Bpe03g01270 Bpe-Chr3:31248322 Bpe04g01608 Bpe-Chr4:22254873 5.65E-13 dispersed
Bpe04g01561 Bpe-Chr4:21946348 Bpe04g01608 Bpe-Chr4:22254873 1.66E-12 dispersed
Bpe04g01608 Bpe-Chr4:22254873 Bpe05g00903 Bpe-Chr5:22054738 2.16E-45 dispersed
Bpe04g01846 Bpe-Chr4:23696497 Bpe04g01608 Bpe-Chr4:22254873 3.78E-40 dispersed
Bpe11g00475 Bpe-Chr11:3672293 Bpe04g01608 Bpe-Chr4:22254873 6.63E-38 dispersed
Bpe11g00777 Bpe-Chr11:5803817 Bpe04g01608 Bpe-Chr4:22254873 6.87E-44 wgd
Bpe15g01101 Bpe-Chr15:20165464 Bpe04g01608 Bpe-Chr4:22254873 2.58E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21355 PF16135 TDBD 1.70E-12 No_clan Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01608 - - csv:101207817 1145.57