Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01628 ATGAGGAAGAAGCTTGATACCCGTTTTCCCGCTGCTCGCATTAAAAAGATAATGCAGGCAGATGAGGATGTTGGAAAGATAGCATTAGCAGTTCCTGTCTTAGTTTCTAAAGCTTTGGAGTTGTTTTTGCAAGACCTTTGTGACCGTACATATGAGATCACCCTTCAGAGGGGTGCAAAAACAATGAGCTCATTGCATTTAAAGCACTGTGTACAAAGCTATAACGTGTTTGATTTCCTGAGAGAAGTTGTTAGCCGGGTTCCTGACTATGGTCACGCTCACCCCGATGCTGCATCTGAAGATCGGAAGAAAAGGAAACCCACTGTTGAAGAAAACAATGACAGTGACGAGGAATTAAGAAAGAGCAAGATGCAGGAGATGAGCCATGGCAGCAGCAGTGGGAGAGGAAGAGGCAGAGGTCGAGGACGAGGCCGTGGACGCAGCAGCCGAAATGCAGAAAGAGACACCATCCAGCACGAGGTTGAGGCTGACCCTTGCACATCGCATCAGCCTGGTAAAAATGAGTTGAACCAAAATATTGATAATGATTGTGGGTCAAAGCAAGTGGCAAAAGAAGCCATCCTTCCGAGCGATGCATCAGATGCAGCCCCTTCAAGCATTGACCTAAATTCTGACTTGAACATGAACGAGGACTCTAAAAACACCGCAGCGGAACCTCCGGCACCAGCACCTGAACCAATTGAGGAGCCTGAACACGAAGAATACCCTGGGTGGTCTCTATCTGGTGTAAACAAGATGGCCATTGATCCACTTCAGCTTGCGCAGCTTGGTAAGAGGTTGGATGAGGACGATGAAGACTATGATGAGGAAGAGTAG 837 47.43 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLREVVSRVPDYGHAHPDAASEDRKKRKPTVEENNDSDEELRKSKMQEMSHGSSSGRGRGRGRGRGRGRSSRNAERDTIQHEVEADPCTSHQPGKNELNQNIDNDCGSKQVAKEAILPSDASDAAPSSIDLNSDLNMNEDSKNTAAEPPAPAPEPIEEPEHEEYPGWSLSGVNKMAIDPLQLAQLGKRLDEDDEDYDEEE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22520131 22528505 + Bpe016347.1 Bpe04g01628 103437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01628 278 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Bpe04g01628 278 MobiDBLite consensus disorder prediction 146 162 - -
Bpe04g01628 278 Coils Coil 260 278 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 170 185 - -
Bpe04g01628 278 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Bpe04g01628 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 277 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 90 125 - -
Bpe04g01628 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Bpe04g01628 278 PANTHER HISTONE SUPERFAMILY PROTEIN 1 277 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 203 221 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 90 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00338 Bpe-Chr1:2125765 Bpe04g01628 Bpe-Chr4:22520131 2.68E-63 dispersed
Bpe04g01628 Bpe-Chr4:22520131 Bpe11g01366 Bpe-Chr11:10229589 2.69E-11 dispersed
Bpe04g01628 Bpe-Chr4:22520131 Bpe15g00914 Bpe-Chr15:18944838 2.72E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21358 PF00808 CBFD_NFYB_HMF 4.10E-19 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01628 K21752 - fve:101315090 319.701