Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01628 ATGAGGAAGAAGCTTGATACCCGTTTTCCCGCTGCTCGCATTAAAAAGATAATGCAGGCAGATGAGGATGTTGGAAAGATAGCATTAGCAGTTCCTGTCTTAGTTTCTAAAGCTTTGGAGTTGTTTTTGCAAGACCTTTGTGACCGTACATATGAGATCACCCTTCAGAGGGGTGCAAAAACAATGAGCTCATTGCATTTAAAGCACTGTGTACAAAGCTATAACGTGTTTGATTTCCTGAGAGAAGTTGTTAGCCGGGTTCCTGACTATGGTCACGCTCACCCCGATGCTGCATCTGAAGATCGGAAGAAAAGGAAACCCACTGTTGAAGAAAACAATGACAGTGACGAGGAATTAAGAAAGAGCAAGATGCAGGAGATGAGCCATGGCAGCAGCAGTGGGAGAGGAAGAGGCAGAGGTCGAGGACGAGGCCGTGGACGCAGCAGCCGAAATGCAGAAAGAGACACCATCCAGCACGAGGTTGAGGCTGACCCTTGCACATCGCATCAGCCTGGTAAAAATGAGTTGAACCAAAATATTGATAATGATTGTGGGTCAAAGCAAGTGGCAAAAGAAGCCATCCTTCCGAGCGATGCATCAGATGCAGCCCCTTCAAGCATTGACCTAAATTCTGACTTGAACATGAACGAGGACTCTAAAAACACCGCAGCGGAACCTCCGGCACCAGCACCTGAACCAATTGAGGAGCCTGAACACGAAGAATACCCTGGGTGGTCTCTATCTGGTGTAAACAAGATGGCCATTGATCCACTTCAGCTTGCGCAGCTTGGTAAGAGGTTGGATGAGGACGATGAAGACTATGATGAGGAAGAGTAG 837 47.43 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLREVVSRVPDYGHAHPDAASEDRKKRKPTVEENNDSDEELRKSKMQEMSHGSSSGRGRGRGRGRGRGRSSRNAERDTIQHEVEADPCTSHQPGKNELNQNIDNDCGSKQVAKEAILPSDASDAAPSSIDLNSDLNMNEDSKNTAAEPPAPAPEPIEEPEHEEYPGWSLSGVNKMAIDPLQLAQLGKRLDEDDEDYDEEE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22520131 22528505 + Bpe016347.1 Bpe04g01628 103437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01628 278 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Bpe04g01628 278 MobiDBLite consensus disorder prediction 146 162 - -
Bpe04g01628 278 Coils Coil 260 278 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 170 185 - -
Bpe04g01628 278 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Bpe04g01628 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 277 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 90 125 - -
Bpe04g01628 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Bpe04g01628 278 PANTHER HISTONE SUPERFAMILY PROTEIN 1 277 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 203 221 - -
Bpe04g01628 278 MobiDBLite consensus disorder prediction 90 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01628 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - fve:101315090 319.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00338 Bpe-Chr1:2125765 Bpe04g01628 Bpe-Chr4:22520131 2.68E-63 dispersed
Bpe04g01628 Bpe-Chr4:22520131 Bpe11g01366 Bpe-Chr11:10229589 2.69E-11 dispersed
Bpe04g01628 Bpe-Chr4:22520131 Bpe15g00914 Bpe-Chr15:18944838 2.72E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 7.8e-73 270.4
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.9 8.6e-72 266.9
Bpe15g00914 . 72 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.1 1.6e-54 209.5
Bpe12g00039 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 1.9e-50 196.1
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.1e-49 192.6
Bpe11g01366 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 77.5 4.0e-53 204.9
Bpe15g00914 . 52 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.3 2.9e-48 188.7
Bpe12g00039 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.9e-47 186.0
Bpe13g00200 BCT,CCT,ECH 56 154 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00222 BCT,CCT,ECH 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00914 . 56 247 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.3 1.2e-54 209.9
Bpe11g01366 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.0 8.3e-53 203.8
Bpe12g00039 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 2.1e-51 199.1
Bpe15g00222 BCT,CCT,ECH 35 172 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.5 1.2e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 6.2e-48 187.6
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 4.9e-65 244.6
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.1 1.9e-64 242.7
Bpe15g00914 . 72 227 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 8.1e-52 200.7
Bpe12g00039 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.5e-47 185.3
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.1e-44 176.0
Bpe12g00039 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 8.1e-63 236.9
Bpe15g00914 . 50 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.5 5.8e-61 230.7
Bpe15g00222 BCT,CCT,ECH 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.0e-49 191.8
Bpe11g01366 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.1e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 179 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.3e-48 188.3
Bpe04g01628 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 55.0 7.5e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21358 PF00808 CBFD_NFYB_HMF 4.10E-19 CL0012 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01628 Bpe_Chr04 FPKM 2.123092 2.857301 8.984648 8.777455 2.144446 1.601609 2.086373 0.0 0.0 0.060839