Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01672 ATGGATTCCATGAAAGAAGAAAGCAATAACTCGGAGAAGGATTTAGATTCTCAGTTATGGCATGCTTGTGCCGGTGGAATGGTTGAAATCCCACCCGTCAATTCAAAAGTCTTCTACTTTCCTCAAGGTCATGCAGAAATGGCCGACGGACAGTTGGATTTTAGAACGCATAAAATTCCACCTCTGGTTCTTACCAGAGTTTCGGCAATTCGATTCATGGCGGATTCGCAAACTGACGAGGTTTTCGCTGAAATTTGTTTGCTTCCTTTGAGCAGTAATGATTTTGAAAGCGGAGCAGACGATTGGATTGGGGGAAACAGCCAGAGTGAAAGCGAAGAAAAGCATACTTCCTTCGCTAAAACGTTGACTCAATCTGATGCCAACAATGGCGGTGGATTTTCCGTCCCTCGCTATTGCGCAGAAACAATTTTTCCGCCTTTGAACTACTCGGCCAATCCGCCCGTTCAAACGATCAACGTAAAAGATGTTCACGGCCAGATTTGGAAGTTTAGGCATATTTATCGGGGGACTCCTCGGCGCCACCTTCTGACGACCGGATGGAGTAATTTCGTGAATTATAAGAAGCTCGTGGCCGGAGACTCGATCGTGTTTTTAAAAGCCGAGAATGGGGAGCTTCGGATCGGAATAAGGAGGGCCAAGAGGGGAATCGGAGGGCAGTTTGATTGCTCAAGAGGAACAGTGAGTGCCGATTCGATAATCGAATCGGCAATTCTTGCATCGAGAGGACACACTTTTGTGGTGAAGTATTTTCCACGCTCTAACACGCCCCCGTTTTTCGTCGGGGCCTGTGCAGTCAGGGCTGCAATGAGAGTTCGATGGTCGGCCGGAATGAGGTTCAAGATGGCTTTCGAAACCGAGGATTCGTCTAGAATTAGCTGGTTCATGGGAACTATATCTTCCATCCAAGTCTCTGATCCCATCCGGTGGCCAGATTCTCCTTGGAGGCTTTTGCAGGTAACATGGGACGAGCCGGATTTATTACAAAATGTGAAGTTCGTCAATCCATGGTCGATTGAGGTGGTGACAAACATGTTACCTTATCATATATCCCCTTTTGGGTCGCTGGCAAAAAAGCCAAAGCTTCTATCGAGCCCGACAATTTCGCCTGAGTTCGTCAAGCCGATGAGCGATTTTCCGGGAATGTTCGATGTCACTCTCGCAGGCATTCAGGGAGCCAGGCACGCTCAATCTACACTCTCTTCATTGAATCTCAGCAAATTTCAAGCTACTAATCTTCCAATGATCGCGAAAAACAACTCCACGGGCAGTGGCAGAAAATCCGAGTGGCAAAACTCGGAAAACCCCTCCAAAATTTTGAAAGAAAAAGAGCTACAAACACCACACATCTTATTATTCGGACAAGTTATCCTTCTAGACCCAAGTGTTTCAAAGGATAACACCATAGACACTGTCGGAAAAAGTTTGTCTGAAAAGACAGACACCTCCGATGGCGCAGGAACATCACCACCTTGGAATAGTTCGCCGGAAAATCTATCGGATGCAGGGTCTCCGTGGTGTAAAGATCACCAGAAAACCGTTGTCGATCTCAAGACCGAGCATTGCAATGAGTTCGGCGATCAAATTTTCTCAGCGGGCAATCGTTTTTCAATTCCTTGA 1638 46.76 MDSMKEESNNSEKDLDSQLWHACAGGMVEIPPVNSKVFYFPQGHAEMADGQLDFRTHKIPPLVLTRVSAIRFMADSQTDEVFAEICLLPLSSNDFESGADDWIGGNSQSESEEKHTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLNYSANPPVQTINVKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNYKKLVAGDSIVFLKAENGELRIGIRRAKRGIGGQFDCSRGTVSADSIIESAILASRGHTFVVKYFPRSNTPPFFVGACAVRAAMRVRWSAGMRFKMAFETEDSSRISWFMGTISSIQVSDPIRWPDSPWRLLQVTWDEPDLLQNVKFVNPWSIEVVTNMLPYHISPFGSLAKKPKLLSSPTISPEFVKPMSDFPGMFDVTLAGIQGARHAQSTLSSLNLSKFQATNLPMIAKNNSTGSGRKSEWQNSENPSKILKEKELQTPHILLFGQVILLDPSVSKDNTIDTVGKSLSEKTDTSDGAGTSPPWNSSPENLSDAGSPWCKDHQKTVVDLKTEHCNEFGDQIFSAGNRFSIP 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22750640 22752385 + Bpe016388.1 Bpe04g01672 103481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01672 545 SMART B3_2 118 220 IPR003340 GO:0003677
Bpe04g01672 545 MobiDBLite consensus disorder prediction 480 507 - -
Bpe04g01672 545 CDD B3_DNA 117 218 IPR003340 GO:0003677
Bpe04g01672 545 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Bpe04g01672 545 MobiDBLite consensus disorder prediction 480 512 - -
Bpe04g01672 545 Pfam Auxin response factor 245 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe04g01672 545 PANTHER AUXIN RESPONSE FACTOR 16 7 228 - -
Bpe04g01672 545 PANTHER AUXIN RESPONSE FACTOR 16 230 493 - -
Bpe04g01672 545 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 228 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe04g01672 545 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 230 493 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe04g01672 545 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Bpe04g01672 545 Gene3D - 279 352 - -
Bpe04g01672 545 Gene3D - 116 220 IPR015300 -
Bpe04g01672 545 SUPERFAMILY DNA-binding pseudobarrel domain 113 220 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01672 Bpe15g01331 CCT
Bpe04g01672 Bpe15g01331 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00791 Bpe-Chr2:5743427 Bpe04g01672 Bpe-Chr4:22750640 1.95E-176 dispersed
Bpe02g01609 Bpe-Chr2:18979131 Bpe04g01672 Bpe-Chr4:22750640 8.28E-119 dispersed
Bpe04g01672 Bpe-Chr4:22750640 Bpe01g00841 Bpe-Chr1:15864973 4.56E-81 dispersed
Bpe15g01331 Bpe-Chr15:21462163 Bpe04g01672 Bpe-Chr4:22750640 0 wgd
Bpe04g00699 Bpe-Chr4:4494819 Bpe04g01672 Bpe-Chr4:22750640 3.26E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21366 PF02362 B3 1.90E-21 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01672 - - tcc:18586407 570.466