Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01673 TCGGCGAAGGACTACCACGACCCACCACCGGCGCCGCTCTTTGACGCGGAGGAGCTGTTGCAGTGGTCTTTCTACAGGGCGTTGATAGCGGAGTTCATAGCTACTTTGCTTTTTCTCTACGTCACTATCTTGACTGTGATTGGGTATAACAGCCAAACCACGTCCGACCCATGCGGCGGCGTAGGGGTTCTAGGCATCGCATGGGCCTTCGGCGGCATGATCTTCGTTCTCGTCTACTGCACTGCTGGAATTTCAGGTTCCCATCTTCGCTTAACTAGTAGTAGTCTTGCAGGGGGTCACATAAACCCAGCCGTGACCTTGGGGTTGTTCTTGGCTCGAAAGGTGTCGCTGGTCCGAGCCGTGATGTACATGGTGGTTCAGTGTTTAGGAGCCATATGCGGAGTGGGGCTCGTTAAGGCGTTCCAAAAGGCTCATTACAGTAATCATGGAGGTGGAGCCAACCACCTCGCCGATGGCTACAGCACAGGCGTCGGTCTGGGTGTAGAGATCATAGGCACCTTCGTTTTGGTCTACACAGTCTTCTCTGCCACTGATCCCAAGAGAAATGCCAGAGACTCCCATGTGCCGGTTCTGGCTCCGCTTCCGATCGGATTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCGATCACCGGCACCGGAATCAACCCAGCTAGAAGTCTTGGAGCTGCTGTCGTCTACAATCAGAAAAACACTTGGGATGAGCAATGGATTTTTTGGGTCGGACCCTTCGTTGGAGCAGCTATTGCAGCGTTCTATCATCAGTTCATACTGAGGGCGGCAGCAGTTAAAGCTCTTGGATCTTTCAGGAGCAATTCCCATGTC 846 53.19 SAKDYHDPPPAPLFDAEELLQWSFYRALIAEFIATLLFLYVTILTVIGYNSQTTSDPCGGVGVLGIAWAFGGMIFVLVYCTAGISGSHLRLTSSSLAGGHINPAVTLGLFLARKVSLVRAVMYMVVQCLGAICGVGLVKAFQKAHYSNHGGGANHLADGYSTGVGLGVEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNQKNTWDEQWIFWVGPFVGAAIAAFYHQFILRAAAVKALGSFRSNSHV 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22754171 22755230 + Bpe025710 Bpe04g01673 103482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 SUPERFAMILY Aquaporin-like 18 266 IPR023271 -
Bpe04g01673 282 Pfam Major intrinsic protein 19 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 PANTHER AQUAPORIN PIP2-1 1 89 - -
Bpe04g01673 282 PANTHER AQUAPORIN PIP2-1 93 279 - -
Bpe04g01673 282 CDD MIP 26 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bpe04g01673 282 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Bpe04g01673 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 89 IPR034294 -
Bpe04g01673 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 93 279 IPR034294 -
Bpe04g01673 282 Gene3D Glycerol uptake facilitator protein. 11 282 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01673 Bpe-Chr4:22754171 Bpe12g00125 Bpe-Chr12:883734 3.35E-153 dispersed
Bpe01g00189 Bpe-Chr1:1132508 Bpe04g01673 Bpe-Chr4:22754171 4.62E-168 wgd
Bpe04g00701 Bpe-Chr4:4503306 Bpe04g01673 Bpe-Chr4:22754171 1.77E-158 wgd
Bpe04g01673 Bpe-Chr4:22754171 Bpe08g00157 Bpe-Chr8:844091 1.29E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01673 K09872 - rcu:8279058 481.1