Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g01683 | ATGATGGAGGCTCCGCTGAGTCCTGCGGGAGGGAGTCACGAAAGTGGGGGAGATCGGAGTCCGAAAGCCGGAATGCGGGAGCATGATCGATTCCTTCCTATTGCTAATATTAGTCGGATCATGAAGAAGGCCTTGCCTGCCAATGGAAAGATCGCTAAGGACGCTAAGGATACCGTCCAGGAATGCGTTTCCGAATTCATCAGCTTCATTACCAGCGAGGCGAGCGACAAATGTCAAAAGGAGAAGAGGAAGACTGTTAATGGCGATGATTTACTGTGGGCAATGGCAACTCTGGGTTTCGAAGATTATATAGTGCCGCTTAAAGTGTACTTATCTAGGTACAGGGAGTTGGAGGGTGACACTAAAGGGCAGGCTAGAGGGGGAGATGGATCTGCTAAAAAGGATGGAGTTGGAATATTGCCTGGTCAAAATGCTCAGCTCCCACTGCAGGGCCAGCATCTGATGTTTCCTTCAATACGAAACTACGAGTAG | 492 | 49.39 | MMEAPLSPAGGSHESGGDRSPKAGMREHDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIVPLKVYLSRYRELEGDTKGQARGGDGSAKKDGVGILPGQNAQLPLQGQHLMFPSIRNYE | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22804541 | 22805709 | - | Bpe016399.3 | Bpe04g01683 | 103492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g01683 | 163 | Gene3D | Histone, subunit A | 20 | 153 | IPR009072 | GO:0046982 | |
Bpe04g01683 | 163 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bpe04g01683 | 163 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Bpe04g01683 | 163 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Bpe04g01683 | 163 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Bpe04g01683 | 163 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Bpe04g01683 | 163 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 152 | - | - | |
Bpe04g01683 | 163 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 152 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Bpe04g01683 | 163 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Bpe04g01683 | 163 | SUPERFAMILY | Histone-fold | 29 | 134 | IPR009072 | GO:0046982 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe04g01683 | Bpe15g01076 | CCT | |
Bpe04g01683 | Bpe15g01076 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g01683 | Bpe-Chr4:22804541 | Bpe07g00646 | Bpe-Chr7:13218659 | 1.08E-58 | dispersed | |
Bpe15g01076 | Bpe-Chr15:19984528 | Bpe04g01683 | Bpe-Chr4:22804541 | 3.49E-64 | wgd | |
Bpe04g00707 | Bpe-Chr4:4554977 | Bpe04g01683 | Bpe-Chr4:22804541 | 1.03E-66 | wgd | |
Bpe04g01683 | Bpe-Chr4:22804541 | Bpe04g01866 | Bpe-Chr4:23814893 | 5.19E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21368 | PF00808 | CBFD_NFYB_HMF | 4.30E-28 | CL0012 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g01683 | K08065 | - | cpap:110824235 | 269.24 |