Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01761 ATGAGAAGAAGACACGTAGTAGGGCGCCCTCAAGGAGCTCTAAACACCGTAACGCCATGCGCAGCCTGTAAGCTCCTCAGACGAAGGTGCGCCCAAGAGTGCCCTTTTTCTCCATACTTCTCTCCCCACGAGCCTCAAAAGTTTGCTTCTGTTCACAAAATCTTCGGCGCCAGCAACGTCTCCAAGATGCTAATGGAGGTGTCGGAGAGTCAAAGAGCAGACGCTGCTAATAGTCTGGTTTATGAGGCTAACTTGAGGTTAAGAGACCCGGTCTACGGCTGCATGGGTACGATTTCAGCTTTGCAACAGCAAGTTCAATCTTTACAGGCTGAGCTTAATGCAGTAAGGAGTCAGATAATGAAATTCAAATCGACTGAATCAAATATTCTACCTTCTTCTCAAGTCCCTCATCTCAACTCTTCCCGACCTGTTTCAGTCGCTGCACCGCCACCGCCGCAGCCGTCAACTCCACCCCCGCGACTTGCTCTACCTCCCCCTTCCTCCGTCTACCACCAGCAGCCCAGCAACCCCCCTGACTATTGCACACTATCTGCAAATATCGCCTACTTTGCCTAA 576 51.04 MRRRHVVGRPQGALNTVTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVSESQRADAANSLVYEANLRLRDPVYGCMGTISALQQQVQSLQAELNAVRSQIMKFKSTESNILPSSQVPHLNSSRPVSVAAPPPPQPSTPPPRLALPPPSSVYHQQPSNPPDYCTLSANIAYFA 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23257142 23257824 - Bpe016471.1 Bpe04g01761 103570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01761 191 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Bpe04g01761 191 MobiDBLite consensus disorder prediction 145 165 - -
Bpe04g01761 191 MobiDBLite consensus disorder prediction 130 177 - -
Bpe04g01761 191 Coils Coil 98 125 - -
Bpe04g01761 191 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Bpe04g01761 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 190 - -
Bpe04g01761 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 9 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01761 Bpe-Chr4:23257142 Bpe08g01420 Bpe-Chr8:14992063 8.47E-61 dispersed
Bpe06g00375 Bpe-Chr6:15240001 Bpe04g01761 Bpe-Chr4:23257142 2.17E-37 transposed
Bpe15g01197 Bpe-Chr15:20728436 Bpe04g01761 Bpe-Chr4:23257142 2.33E-30 wgd
Bpe15g01223 Bpe-Chr15:20852868 Bpe04g01761 Bpe-Chr4:23257142 2.64E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21375 PF03195 LOB 9.80E-41 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01761 - - mesc:110618830 241.891