Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01769 ATGGCGGTGGCTGCATTGCCTGCTCTGTGCATTATGCTCCTGGCCTTCCACCTTAGCTTTGGTAGCAGTTATGGACAGTGGGAGAGCGGCCATGCCACATTCTATGGCGGTGGAGATGCATCTGGCACGATGGGGGGAGCTTGTGGGTATGGGAACTTGCATAGCCAAGGGTACGGGACCAACACTGCCGCGTTGAGCACCGCCTTGTTCAACAGCGGGCTGAGCTGTGGGAGCTGCTACGAACTCACTTGCAGTGACGATCCAAAATGGTGCCTACCTGGCTCGATCGTCGTCACTGCTACTAACTTTTGCCCGCCAAACTATGCTTTGTCCAACGACGATGGTGGCTGGTGCAATCCTCCCCTCCAACACTTCGACTTGGCCGAGCCTGCTTTCCTCCAAATTGCGCAGTATCGAGCTGGAATCGTTCCTGTATCCTTCAGAAGGGACAAGGCTATCAAGAGATTCCTTGTGAGGAACATTGTAGAGCAGGCTGCTGTCAGGGATGTGCAAGAAGCTTGTGTCTATGATCAGTATACTCTTCCAAAGCTGTACGCTAAGATGCAGTATTGCGTCTCCTGTGCCATTCACTCACACGTTGTGAGGGTTCGATCTCGTACTGATAGGAGAAACCGCCAGCCACCACAGCGCTTTATTAGACGCAGGGATGATGCGCCAAAGCCTGGTCAGCCTGGTCAAGGACCTCGTCCTGCCGGAACAGGGAATCCTGTGCGCCCATGA 741 54.25 MAVAALPALCIMLLAFHLSFGSSYGQWESGHATFYGGGDASGTMGGACGYGNLHSQGYGTNTAALSTALFNSGLSCGSCYELTCSDDPKWCLPGSIVVTATNFCPPNYALSNDDGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDAPKPGQPGQGPRPAGTGNPVRP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23283611 23291158 - Bpe016477.1 Bpe04g01769 103578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01769 246 PANTHER EXPANSIN-A15 15 163 IPR002963 GO:0009664
Bpe04g01769 246 SUPERFAMILY Barwin-like endoglucanases 26 149 IPR036908 -
Bpe04g01769 246 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Bpe04g01769 246 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Bpe04g01769 246 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Bpe04g01769 246 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Bpe04g01769 246 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Bpe04g01769 246 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Bpe04g01769 246 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Bpe04g01769 246 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Bpe04g01769 246 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Bpe04g01769 246 PANTHER EXPANSIN 15 163 - -
Bpe04g01769 246 Pfam Lytic transglycolase 62 147 IPR009009 -
Bpe04g01769 246 ProSitePatterns Ribosomal protein S26e signature. 190 197 IPR000892 GO:0003735|GO:0005840|GO:0006412
Bpe04g01769 246 MobiDBLite consensus disorder prediction 203 246 - -
Bpe04g01769 246 Gene3D - 16 146 IPR036908 -
Bpe04g01769 246 Gene3D Ribosomal protein S26e 147 231 IPR038551 -
Bpe04g01769 246 SMART dpbb_1 62 147 IPR007112 -
Bpe04g01769 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Bpe04g01769 246 MobiDBLite consensus disorder prediction 207 227 - -
Bpe04g01769 246 Pfam Ribosomal protein S26e 148 222 IPR000892 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01769 Bpe-Chr4:23283611 Bpe10g00880 Bpe-Chr10:14579466 1.81E-75 dispersed
Bpe15g00312 Bpe-Chr15:14628218 Bpe04g01769 Bpe-Chr4:23283611 1.64E-50 dispersed
Bpe04g01769 Bpe-Chr4:23283611 Bpe13g01406 Bpe-Chr13:19294928 1.49E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01769 - K20628 jre:108991763 261.536