Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01783 ATGTCCTCCGACGACATGAATGCCCTCAACTCGCAGCTACTATTCCAAGACGAAACTTTGCGCTTTAATTGCGCCACTCCTCAGCGCCGAGTTGGGGAACCCGGTCCCAAAACTCGAGAGCTTAGCGGTTTCCTAGATGATAAGCTCTTCTCAGTTGATCGTGCTCGCTTCTTCACTCCCCAGGGACAGGATTTCCGACGGACGATATATGGTGACGCCCCGGAGAGAACAGAGAGTCGAAATTGGAATGGAAATGGTAGTACTGCGACGGCCAGCGGCAAATCCTCCGACGAGGACGATGATGAAGAGGAGGACGAAGATGACGAAGTCGACGATGACGGCGTAGGTGATGTGGAGGGACTTGTTGCTGATTCTATTGGTCGTAAGACCAATTGTAATGTTAACATAGACGCAAACAATCAAAGTGGTGGGAGTGGACTAACCGGCGGAAAGGAAATCGGGAACGGAAAACCAAAGCAACACTCACTTTTTGATGGACTGGGGAAGGATGGTGCGGTTTGCCAGTCAGGAAATCACTCCAGAGCAAGTGCGACTGAGAACAACCAGCTAGGAAGACTTGGGAACTACTCCAATGCAGTAACTATTGGAGAGTCCGAGAATGACATGTATTATTCACAGTTTCTGCAGGGAGCTGTATCATCTTCATCTGGGCTGAAGGATTTGGGCGTGGAAAATGGCTCTGGATTTAGTAGGAGAAAGGATTTCTCCTTTAATGGTGATGCTGGGGAGTCTTTGAGAGCAATCCTATCGGACCCTGTGACGGATGCTCTTATGGACGATGCAATGATATTACCTTGTGGGCATTCATTTGGAAGTGGCGGTATACAACACGTGACTAGAATTAAAGCTTGCTACGCATGTTCTGTGTCCGTGTCAGAAGATTCAATTGCTCCAAATCTATCTCTTCGAGCTGCTGTTCAGGCCTTCCGTCGAGAAGAAGAGTTACAGCTGTATCGTTCACACAAAAGGAGAAGGGAGAGATTTGACCAGGATAAAAATGGTTATGGTGATATAACTCTCATGGACCAACCTAGGGGAAGAGGTGTGCAGTTTCCGTTTTCAGTGACAGACCGAGTTATTATAAAGGGAAACAAGCGAACACCACAGCGTTTTGTCGGTAGAGAGGCTGTCGTGACAACACAATGCTTGAATGGATGGTACGTAGTGAAGACACTGGACAATGCAGAGAGTGTGAAACTTCAGTATCGCTCGCTAGCCAGGGTCGGAGATGATCTGCCTTCGAGGACGCATTCGAGCAAGATCTCGCCAAACTGGCTTTAG 1302 48.31 MSSDDMNALNSQLLFQDETLRFNCATPQRRVGEPGPKTRELSGFLDDKLFSVDRARFFTPQGQDFRRTIYGDAPERTESRNWNGNGSTATASGKSSDEDDDEEEDEDDEVDDDGVGDVEGLVADSIGRKTNCNVNIDANNQSGGSGLTGGKEIGNGKPKQHSLFDGLGKDGAVCQSGNHSRASATENNQLGRLGNYSNAVTIGESENDMYYSQFLQGAVSSSSGLKDLGVENGSGFSRRKDFSFNGDAGESLRAILSDPVTDALMDDAMILPCGHSFGSGGIQHVTRIKACYACSVSVSEDSIAPNLSLRAAVQAFRREEELQLYRSHKRRRERFDQDKNGYGDITLMDQPRGRGVQFPFSVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLARVGDDLPSRTHSSKISPNWL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23355592 23365231 + Bpe016490.1 Bpe04g01783 103592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01783 433 MobiDBLite consensus disorder prediction 96 118 - -
Bpe04g01783 433 MobiDBLite consensus disorder prediction 78 93 - -
Bpe04g01783 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 42 433 - -
Bpe04g01783 433 SUPERFAMILY RING/U-box 252 323 - -
Bpe04g01783 433 MobiDBLite consensus disorder prediction 132 148 - -
Bpe04g01783 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 42 433 - -
Bpe04g01783 433 MobiDBLite consensus disorder prediction 132 155 - -
Bpe04g01783 433 MobiDBLite consensus disorder prediction 75 118 - -
Bpe04g01783 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01783 - - - mcha:111015962 548.895
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g01247 CCT 9 736 Plant U-box Gene Family AT5G57035 50.6 5.8e-213 737.6
Bpe04g01783 . 199 433 Plant U-box Gene Family AT5G05230 56.1 1.9e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01783 Bpe_Chr04 FPKM 7.524437 6.888915 1.997743 1.98005 0.0 0.0 0.0 0.0 0.0 0.0