Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01798 ATGGGTGGGAATTCTCCATGCGCGTCCTGTAAGCTTTTGAGAAGACGATGTGCAAAGGAGTGTATCTTCGCCCCTTATTTTCCCTCAGACGACCCTCATAAGTTCGCCATTGTTCACAAGGTTTTTGGAGCTAGCAATATCAGCAAAATGTTGAAGGAGCTTCCAGTTCATCAGAGAGCAGATGCTGTGAGCAGTCTAGTTTATGAAGCAAATGCAAGAGTGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTACCTCCAAACCCAGGTTTCTCAGCTTCAAATGGAACTTTCAGTGGCTCAAGCTGAGATTCTATGCATCCAAATGCAGCAAGAGCCAATGGCTGCTTTGGCAAGTAGCTCCCCATTATACCCAGATGAGAAGTCTTATAGTGTTCTTCCAAACAATCTCCCTCACTACCTCAATTTTGCCTCTTCTAATACTGTAATTCTTGACTCTCTCAAAAGGGAGACCCTTTACAGCCACGACATGGTTTCTTAG 507 44.97 MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNISKMLKELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMELSVAQAEILCIQMQQEPMAALASSSPLYPDEKSYSVLPNNLPHYLNFASSNTVILDSLKRETLYSHDMVS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23446699 23447297 - Bpe016505.1 Bpe04g01798 103607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01798 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bpe04g01798 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 145 - -
Bpe04g01798 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bpe04g01798 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01798 Bpe-Chr4:23446699 Bpe11g01042 Bpe-Chr11:7773367 3.93E-60 dispersed
Bpe06g00375 Bpe-Chr6:15240001 Bpe04g01798 Bpe-Chr4:23446699 9.66E-36 dispersed
Bpe14g00112 Bpe-Chr14:1585846 Bpe04g01798 Bpe-Chr4:23446699 9.86E-10 dispersed
Bpe15g01233 Bpe-Chr15:20922408 Bpe04g01798 Bpe-Chr4:23446699 4.89E-42 wgd
Bpe15g01174 Bpe-Chr15:20604486 Bpe04g01798 Bpe-Chr4:23446699 6.89E-111 wgd
Bpe04g01798 Bpe-Chr4:23446699 Bpe08g01420 Bpe-Chr8:14992063 1.69E-46 wgd
Bpe04g01798 Bpe-Chr4:23446699 Bpe08g01408 Bpe-Chr8:14943027 3.48E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21381 PF03195 LOB 1.40E-42 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01798 - - qsu:112026683 269.24