Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g01807 | ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTGCCCGCTGAGGAAGTTCCTCCCGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAAAGGAAGGATTGGCTTTCACTAGTGGCTGTGCACAGTGATTGCTGGTTGCTCTCTGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAGGAGCGCCACCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATTCTAAGCTAATCGACGAAAGTTACGGAGAGGACGAAGACGAGCACAGTGACACTCTTTGTGGAAGCTGCGGTGGTAATTACAGCGGGGAGGAGTTTTGGATCGGTTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCTTAA | 726 | 47.11 | MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSRSATKRSIDGQARSSNSKLIDESYGEDEDEHSDTLCGSCGGNYSGEEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23499448 | 23506903 | - | Bpe016513.1 | Bpe04g01807 | 103616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g01807 | 241 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 2 | 240 | - | - | |
Bpe04g01807 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - | |
Bpe04g01807 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - | |
Bpe04g01807 | 241 | PANTHER | CPG BINDING PROTEIN | 2 | 240 | IPR045104 | GO:0006355|GO:0042393 | |
Bpe04g01807 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 239 | IPR011011 | - | |
Bpe04g01807 | 241 | MobiDBLite | consensus disorder prediction | 142 | 183 | - | - | |
Bpe04g01807 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
Bpe04g01807 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
Bpe04g01807 | 241 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
Bpe04g01807 | 241 | Pfam | Alfin | 10 | 136 | IPR021998 | GO:0006355|GO:0042393 | |
Bpe04g01807 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 236 | IPR013083 | - | |
Bpe04g01807 | 241 | Pfam | PHD-finger | 188 | 236 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00909 | Bpe-Chr2:7559355 | Bpe04g01807 | Bpe-Chr4:23499448 | 1.71E-116 | dispersed | |
Bpe04g01807 | Bpe-Chr4:23499448 | Bpe14g00276 | Bpe-Chr14:2783384 | 1.09E-90 | dispersed | |
Bpe15g01161 | Bpe-Chr15:20480741 | Bpe04g01807 | Bpe-Chr4:23499448 | 2.06E-12 | wgd | |
Bpe04g00775 | Bpe-Chr4:4982058 | Bpe04g01807 | Bpe-Chr4:23499448 | 4.77E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21382 | PF12165 | Alfin | 7.30E-68 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g01807 | - | - | qsu:112011947 | 448.743 |