Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01807 ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTGCCCGCTGAGGAAGTTCCTCCCGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAAAGGAAGGATTGGCTTTCACTAGTGGCTGTGCACAGTGATTGCTGGTTGCTCTCTGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAGGAGCGCCACCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATTCTAAGCTAATCGACGAAAGTTACGGAGAGGACGAAGACGAGCACAGTGACACTCTTTGTGGAAGCTGCGGTGGTAATTACAGCGGGGAGGAGTTTTGGATCGGTTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCTTAA 726 47.11 MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSRSATKRSIDGQARSSNSKLIDESYGEDEDEHSDTLCGSCGGNYSGEEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23499448 23506903 - Bpe016513.1 Bpe04g01807 103616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01807 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 240 - -
Bpe04g01807 241 SMART PHD_3 187 235 IPR001965 -
Bpe04g01807 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Bpe04g01807 241 PANTHER CPG BINDING PROTEIN 2 240 IPR045104 GO:0006355|GO:0042393
Bpe04g01807 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Bpe04g01807 241 MobiDBLite consensus disorder prediction 142 183 - -
Bpe04g01807 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Bpe04g01807 241 CDD PHD_AL_plant 187 237 IPR044104 -
Bpe04g01807 241 MobiDBLite consensus disorder prediction 149 171 - -
Bpe04g01807 241 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Bpe04g01807 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 236 IPR013083 -
Bpe04g01807 241 Pfam PHD-finger 188 236 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00909 Bpe-Chr2:7559355 Bpe04g01807 Bpe-Chr4:23499448 1.71E-116 dispersed
Bpe04g01807 Bpe-Chr4:23499448 Bpe14g00276 Bpe-Chr14:2783384 1.09E-90 dispersed
Bpe15g01161 Bpe-Chr15:20480741 Bpe04g01807 Bpe-Chr4:23499448 2.06E-12 wgd
Bpe04g00775 Bpe-Chr4:4982058 Bpe04g01807 Bpe-Chr4:23499448 4.77E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21382 PF12165 Alfin 7.30E-68 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01807 - - qsu:112011947 448.743