Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01820 ATGGAAGCCACACCCAAGTCCCCTGTTGTTCAAGTGGAAGAAGAAGCTCCTCCCCGGAGCTCGGTTACCGTCTCCGGCGACTTTGAGGTGTCGGGTACTGTAGAGCATAGGCGTTCAAGAGAGGTTGTGATTGAAATCGTCGGAGTAGTGCCGGAGAAGGGGCGGGGATCTTCTGCGTCTGAGTGTTCAGTGGTGGTGGATCTGGATCTGGATCCGCCAGTACAGGATAATAAGTTTCATAAAGGAAAAGCAGAGAGGGATTGTAGGATTTGCCATCTGAATTTAGGAGGAACGAATCACGAATCTGGAATTCCAATAGAACTGGGGTGCTCTTGCAAGAATGATTTAGCTGCTGCCCATAAACACTGTGCTGAGACTTGGTTCAAAATCAAGGGTAACAAGGTCTGTGAGATCTGCGGGTCAATTGCTCGGAATGTGACGGAAGTTAATCCACTAGACTCCGCAGAGTACCAGAGCATTGCAAGCAACGAGGCTATAATGGTGGCTGTAGCTCCGGCGGGACAGGTCCGGCGGTTCTGGCACGGCCATAGATTCCTAAACGTTCTGCTAGCTACAATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTCCCCTCGTAA 630 50.95 MEATPKSPVVQVEEEAPPRSSVTVSGDFEVSGTVEHRRSREVVIEIVGVVPEKGRGSSASECSVVVDLDLDPPVQDNKFHKGKAERDCRICHLNLGGTNHESGIPIELGCSCKNDLAAAHKHCAETWFKIKGNKVCEICGSIARNVTEVNPLDSAEYQSIASNEAIMVAVAPAGQVRRFWHGHRFLNVLLATMVFAFVISWLFHFNVPS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23559370 23560404 + Bpe016527.1 Bpe04g01820 103629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01820 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 150 IPR013083 -
Bpe04g01820 209 SUPERFAMILY RING/U-box 84 142 - -
Bpe04g01820 209 MobiDBLite consensus disorder prediction 1 25 - -
Bpe04g01820 209 Pfam RING-variant domain 88 139 IPR011016 GO:0008270
Bpe04g01820 209 CDD RING_CH-C4HC3_MARCH 88 140 - -
Bpe04g01820 209 PANTHER ZINC FINGER, RING-CH-TYPE 46 209 - -
Bpe04g01820 209 SMART ringv_2 87 140 IPR011016 GO:0008270
Bpe04g01820 209 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270
Bpe04g01820 209 PANTHER OS01G0850200 PROTEIN 46 209 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01022 Bpe04g01820 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01820 Bpe-Chr4:23559370 Bpe07g00540 Bpe-Chr7:11734378 2.43E-19 dispersed
Bpe05g00394 Bpe-Chr5:18230529 Bpe04g01820 Bpe-Chr4:23559370 2.07E-10 transposed
Bpe10g00277 Bpe-Chr10:10116558 Bpe04g01820 Bpe-Chr4:23559370 6.86E-11 transposed
Bpe15g01136 Bpe-Chr15:20375473 Bpe04g01820 Bpe-Chr4:23559370 2.42E-101 wgd
Bpe03g01022 Bpe-Chr3:29632886 Bpe04g01820 Bpe-Chr4:23559370 1.10E-63 wgd
Bpe04g01820 Bpe-Chr4:23559370 Bpe08g01389 Bpe-Chr8:14847294 3.45E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01820 - - zju:107413802 209.92