Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01828 ATGGATTCTCACGCGAACTCAACCCCTACGAACAGTAGCACAAGCAACCCCGATTCCGCTCCTCGGAAACATTGCGATGATAGCCGAGAAAATTATCAGGAAACTGAAGATCCAATCCCCGGCGGCCATGAGGGCGTCGAACCAGGTAGTACCAGCATCACTCGCCGGCCTCGTGGAAGACCTCCAGGGTCCAAAAACAAGCCGAAACCACCAGTAGTCGTTACTAAAGAAAGCCCAAATGCTCTCCGAAGCCACGTATTGGAAATCAGCACGGGCTGCGACATCGTTGAATGCATCGCCACCTTCGCCCAACGCCGTCACCGGGGAGTCTCCGTTCTGAGCGGCAGCGGCATTGTCACAAACGTTTCTTTCCGGCAACCTGGTGCACTAGACGGAGTCATCACTCTCACTGGCCGATTCGAAATTCTGTCTCTATCTGGTGCATTTTTACCAGCCCCAGCTCCTCCTGGAGCTACTGGGTTGACCGTATACTTAGCAGGAGGACAAGGTCAGGTGGTCGGTGGGACAGTGGTGGGTTCACTCGTGGCTTCCAGCCTGGTAATGGTGATCGCAGCAACATTCACAAATGCAACTTACGAGCGACTCCCAATCGAAGATGGGCAGCAAAACAACGATCAGACAACTACATTACAGGCGCAACCAGTACCTCATAGCATCGGCGAACAACCTCAACCGCCAATCTACAATGCGCCGCCTAATTTCACACCAAATGGTCAGATGCCTGCTGATGTTTTCTGGGTTTCTCCTACTCGTCCCCCTCCCTCCTTCTAA 792 53.28 MDSHANSTPTNSSTSNPDSAPRKHCDDSRENYQETEDPIPGGHEGVEPGSTSITRRPRGRPPGSKNKPKPPVVVTKESPNALRSHVLEISTGCDIVECIATFAQRRHRGVSVLSGSGIVTNVSFRQPGALDGVITLTGRFEILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGTVVGSLVASSLVMVIAATFTNATYERLPIEDGQQNNDQTTTLQAQPVPHSIGEQPQPPIYNAPPNFTPNGQMPADVFWVSPTRPPPSF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23606257 23607048 + Bpe016535.1 Bpe04g01828 103637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01828 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 263 - -
Bpe04g01828 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 263 IPR014476 GO:0003680
Bpe04g01828 263 MobiDBLite consensus disorder prediction 1 19 - -
Bpe04g01828 263 MobiDBLite consensus disorder prediction 1 78 - -
Bpe04g01828 263 MobiDBLite consensus disorder prediction 20 41 - -
Bpe04g01828 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 207 - -
Bpe04g01828 263 CDD DUF296 83 166 IPR005175 -
Bpe04g01828 263 MobiDBLite consensus disorder prediction 222 263 - -
Bpe04g01828 263 Gene3D - 82 214 - -
Bpe04g01828 263 PIRSF ESCAROLA 1 258 IPR014476 GO:0003680
Bpe04g01828 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Bpe04g01828 263 ProSiteProfiles PPC domain profile profile. 79 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01716 Bpe04g01828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01828 Bpe-Chr4:23606257 Bpe05g00865 Bpe-Chr5:21849956 8.39E-72 dispersed
Bpe15g01274 Bpe-Chr15:21146727 Bpe04g01828 Bpe-Chr4:23606257 1.03E-92 wgd
Bpe04g01716 Bpe-Chr4:23004462 Bpe04g01828 Bpe-Chr4:23606257 1.79E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01828 - - qsu:112039774 252.292