Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01857 ATGATGCTCGCTGAGACTCGGAAAATTAATTCAATCATGTTGAGAAAAGAAATCTCAGATGTTGCAATCTCGGCTTCCAAAGCCCTTCAGTGTTCCACTTCGTTTCCTGCTTCTCGAAGTTCTCTTTCGTTAACATTTTCGGAGTCGACGATGGACGAAAACATCGAGAATGCTGAATCTGTTATCTGCAAATGGGATTTGAATTCTTCTACTATCAACAAATTAACTTACCTCTTCCAACACAGCCGGAACGAAGCTAGGGATTTTCTCAAATCGGTCACTGGTTTGAGAAAGGCGATGCATTATCTGGTCATTGAAAACGCGACTTCCCTGAAACTCTCTCGAGCTCAAAAGCTAATGCAAATCGCCATGAAAAGACTCGAGAAAGAGTTCTATCAAATTCTGGTCTCCAATCGCAACCATCTCCATCCAGAGTCTGTTTCCGGTCGATCTTCCGGTGGATCTTCTTATTCCGACGAAGACGACGAGATTCGTGCAGATTCTGAGCTGGAAATGACTGGTAAGTATATCTCTGAGACGGAAAGAGCTTCAGAATTGGCCATGTCTGATTTGAAATCCTTAGCGGATTGTATGATTAGTTCCGGATATAAAAAAGAGTGCGTGAATATCTATAAAACTATCAGAAAATCCATAGTTGATGAAGCCCTATATCGTCTTGGAACTGAAAGATTTAAATCCCTTCAACTTCAAAAGCTGAATTGGGAATCGCTTGACCACATGATCAAAAGGTGGATTGTCGTTGTTAAGATCGCTGTGAGAAAGCTGTTCAGAGGGGAAAGAATTATCTGCGATCATGTTTTTTCATCTTCAGAAGCAATAAGAGAGTCATGTTTCGGCGAAATAACCAAGGAAGGAGCAATCAATCTCTTCAAATTTCCAGACGTGATCACCAGAAACAAGAAGGACACAGAAACAATTTTCCTGTTACTTGATCTTCACGAAGCAGTCTGTGATCTATGGCCGGAGATCGAATCGATTTTTAACTTTTCATCAACCTCAGCAGTCCAATCACAAGCCCATTTATCTCTGTTCAAACTTCGAGATTCAATTCGAGCTATTATCTCCGATTTTGAATCCAAAGTTCAGAAAGATTCCTCTAAATCACCAGTTTACGGCGGTGGAATTCACCCACTAACTCGTTGGGCGATGACTTTCATCGCTGCTCTTTCAGATTACAGTGGAACTCTCTCCTTCATCATTACAGATAGCACGCACTCCTTAGATTCCCAATTCGCCGAGTCTTACTTTGAAATTCCCTCCCCCGAGGTTTCTTCGACTCCATTGGTGGCCACCCACTTAGCTTGGCTCATCTTAGTTCTTCTCTGCAAACTCGATGGCAAAGCTGAGATCTACAAAGACGTGTCTTTATCATACCTTTTCCTCATCAATAATCTGCAGTTAATCGTCGAAAAGGTATCCTCAACCAACCTGAAATACCTTTTTGGCAGTTCTTGGATTTCAAATCATACGAAGAAATTGAAATTATATGCTTCAAGCTATGAATCTTCTGCTTGGCACAAGGTCTTGTCATCTCTGCAACTCTGTAGCTCTTCTGCAATTTCTGTGAGGGAATGCTTTAAGAAGTTCAATGCAGCTTTTGAAGAGGCATACAGGAAGCAAACTTCATGGATTCTTTGCGATTCCAAGCTCAGGGATGAAATCAAGGTGTCAATAGCTAACAAAGTCTTACCAGCTTACAGAGATTTTTACGACAAAAACGTTGTTTTGCTAAGCGGGGAGAGGAATTTAGAGTTGCTGATAAGATTTTCTCCAGATGATCTTGGGAATTATCTATCTGATTTACTCCATGGTGCTTCTTCTTCTTCCTCTGCCAGTTCCTCATCGTCGTCTTCAGTGTTGAACTCTATAGGCTGCTTACCAGCCCTTCCTAGACGAGCCTGA 1923 41.65 MMLAETRKINSIMLRKEISDVAISASKALQCSTSFPASRSSLSLTFSESTMDENIENAESVICKWDLNSSTINKLTYLFQHSRNEARDFLKSVTGLRKAMHYLVIENATSLKLSRAQKLMQIAMKRLEKEFYQILVSNRNHLHPESVSGRSSGGSSYSDEDDEIRADSELEMTGKYISETERASELAMSDLKSLADCMISSGYKKECVNIYKTIRKSIVDEALYRLGTERFKSLQLQKLNWESLDHMIKRWIVVVKIAVRKLFRGERIICDHVFSSSEAIRESCFGEITKEGAINLFKFPDVITRNKKDTETIFLLLDLHEAVCDLWPEIESIFNFSSTSAVQSQAHLSLFKLRDSIRAIISDFESKVQKDSSKSPVYGGGIHPLTRWAMTFIAALSDYSGTLSFIITDSTHSLDSQFAESYFEIPSPEVSSTPLVATHLAWLILVLLCKLDGKAEIYKDVSLSYLFLINNLQLIVEKVSSTNLKYLFGSSWISNHTKKLKLYASSYESSAWHKVLSSLQLCSSSAISVRECFKKFNAAFEEAYRKQTSWILCDSKLRDEIKVSIANKVLPAYRDFYDKNVVLLSGERNLELLIRFSPDDLGNYLSDLLHGASSSSSASSSSSSSVLNSIGCLPALPRRA 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23774133 23776055 + Bpe016563.1 Bpe04g01857 103666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01857 640 PANTHER EXOCYST COMPLEX PROTEIN EXO70 23 620 IPR004140 GO:0000145|GO:0006887
Bpe04g01857 640 Gene3D Exocyst complex component Exo70 60 618 - -
Bpe04g01857 640 SUPERFAMILY Cullin repeat-like 83 608 IPR016159 -
Bpe04g01857 640 Pfam Exo70 exocyst complex subunit 249 607 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bpe04g01857 640 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 23 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01857 K07195 EXOC7, EXO70; exocyst complex component 7 - jre:108996488 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01857 Bpe-Chr4:23774133 Bpe15g00216 Bpe-Chr15:13291361 1.96E-103 dispersed
Bpe01g00153 Bpe-Chr1:856096 Bpe04g01857 Bpe-Chr4:23774133 0 wgd
Bpe11g00785 Bpe-Chr11:5866817 Bpe04g01857 Bpe-Chr4:23774133 0 wgd
Bpe15g01092 Bpe-Chr15:20102484 Bpe04g01857 Bpe-Chr4:23774133 0 wgd
Bpe02g00817 Bpe-Chr2:6012225 Bpe04g01857 Bpe-Chr4:23774133 3.39E-132 wgd
Bpe03g01053 Bpe-Chr3:29817665 Bpe04g01857 Bpe-Chr4:23774133 0 wgd
Bpe04g00723 Bpe-Chr4:4657259 Bpe04g01857 Bpe-Chr4:23774133 6.43E-149 wgd
Bpe04g01857 Bpe-Chr4:23774133 Bpe08g00122 Bpe-Chr8:630500 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01931 . 10 648 EXO70 exocyst subunit family AT5G03540 75.2 1.6e-277 951.8
Bpe02g00708 . 1 639 EXO70 exocyst subunit family AT5G03540 71.9 8.5e-266 912.9
Bpe02g00708 . 1 639 EXO70 exocyst subunit family AT5G52340 78.5 4.2e-291 996.9
Bpe04g01931 . 12 648 EXO70 exocyst subunit family AT5G52340 73.0 7.8e-269 922.9
Bpe02g00708 . 145 632 EXO70 exocyst subunit family AT5G52350 62.6 5.9e-170 594.3
Bpe04g01931 . 147 650 EXO70 exocyst subunit family AT5G52350 58.3 1.5e-160 563.1
Bpe01g00069 . 1 630 EXO70 exocyst subunit family AT5G58430 65.3 1.6e-245 845.5
Bpe01g00069 . 1 629 EXO70 exocyst subunit family AT1G07000 50.7 1.8e-174 609.4
Bpe04g00872 . 63 644 EXO70 exocyst subunit family AT5G13150 50.2 5.2e-159 558.1
Bpe06g00808 BCT 8 607 EXO70 exocyst subunit family AT1G72470 61.6 2.2e-207 718.8
Bpe10g00709 BCT 1 581 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-207 718.8
Bpe10g00709 BCT 1 579 EXO70 exocyst subunit family AT1G54090 62.5 4.1e-206 714.5
Bpe06g00808 BCT 9 605 EXO70 exocyst subunit family AT1G54090 59.7 1.6e-205 712.6
Bpe10g00709 BCT 1 580 EXO70 exocyst subunit family AT3G14090 63.9 7.1e-214 740.3
Bpe06g00808 BCT 2 606 EXO70 exocyst subunit family AT3G14090 60.3 6.2e-210 727.2
Bpe13g00204 BCT,CCT 13 648 EXO70 exocyst subunit family AT5G50380 60.4 4.5e-222 767.7
Bpe15g00216 CCT 13 652 EXO70 exocyst subunit family AT5G50380 61.2 8.6e-221 763.5
Bpe12g00483 BCT,CCT 13 649 EXO70 exocyst subunit family AT5G50380 57.6 1.6e-203 706.1
Bpe07g00886 . 13 639 EXO70 exocyst subunit family AT5G50380 56.4 3.2e-199 691.8
Bpe04g00025 . 15 683 EXO70 exocyst subunit family AT4G31540 70.3 3.9e-282 967.2
Bpe04g01857 . 40 611 EXO70 exocyst subunit family AT3G55150 51.9 5.8e-163 571.2
Bpe15g01092 . 30 620 EXO70 exocyst subunit family AT3G55150 51.3 1.9e-161 566.2
Bpe15g01092 . 10 620 EXO70 exocyst subunit family AT2G39380 51.4 4.8e-165 578.2
Bpe04g01857 . 33 611 EXO70 exocyst subunit family AT2G39380 52.5 6.9e-164 574.3
Bpe03g01053 . 37 604 EXO70 exocyst subunit family AT3G09530 50.9 1.3e-146 516.9
Bpe03g01053 . 1 613 EXO70 exocyst subunit family AT3G09520 55.0 3.1e-177 618.6
Bpe04g01604 . 1 607 EXO70 exocyst subunit family AT3G09520 52.7 4.4e-171 598.2
Bpe01g00153 CCT 11 608 EXO70 exocyst subunit family AT5G59730 53.6 9.8e-171 597.0
Bpe08g00122 BCT,CCT 4 578 EXO70 exocyst subunit family AT5G59730 50.6 2.3e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01857 Bpe_Chr04 FPKM 10.834068 12.237858 9.556168 9.938482 11.278866 9.858334 11.662704 14.257683 15.083287 14.721881