Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01866 ATGGCGGAGGCTCCGACGAGTCCAGCCGGTGGGAGTCACGAGAGTGGCGGTGAGAGAAGTCCGGGTACCGTTGTGCGGGAACAAGACCGATATCTTCCGATAGCCAATATTAGCAGGATCATGAAGAAGGCGTTGCCTGCAAACGGAAAAATCGCTAAAGATGCAAAGGACACCGTCCAAGAATGTGTCTCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAAAGAGAAGAGGAAGACGATCAATGGTGACGACTTGTTGTGGGCAATGGCAACTTTAGGATTTGAGGACTATATTGATCCCCTTAAGGTGTATCTAAATAGATACAGAGAGTTTTGGCAGGGGGATGCCAAAGGGTCTGCTAGAGGTGGGGATGACTCTGCTAAACGAGATGCACTTGGTGTCCTTCCTAATCCAAATTCACAGGTTTTGTTTTAA 453 48.79 MAEAPTSPAGGSHESGGERSPGTVVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREFWQGDAKGSARGGDDSAKRDALGVLPNPNSQVLF 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23814893 23816123 + Bpe016573.1 Bpe04g01866 103675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01866 150 Gene3D Histone, subunit A 22 139 IPR009072 GO:0046982
Bpe04g01866 150 MobiDBLite consensus disorder prediction 122 150 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bpe04g01866 150 MobiDBLite consensus disorder prediction 1 25 - -
Bpe04g01866 150 SUPERFAMILY Histone-fold 28 136 IPR009072 GO:0046982
Bpe04g01866 150 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bpe04g01866 150 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 148 - -
Bpe04g01866 150 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bpe04g01866 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01866 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - pop:7469769 255.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00696 Bpe-Chr4:4455196 Bpe04g01866 Bpe-Chr4:23814893 2.25E-79 dispersed
Bpe04g01866 Bpe-Chr4:23814893 Bpe14g00737 Bpe-Chr14:5698458 4.36E-58 dispersed
Bpe12g00503 Bpe-Chr12:10867718 Bpe04g01866 Bpe-Chr4:23814893 6.35E-18 dispersed
Bpe15g00553 Bpe-Chr15:16595219 Bpe04g01866 Bpe-Chr4:23814893 1.07E-18 dispersed
Bpe15g01076 Bpe-Chr15:19984528 Bpe04g01866 Bpe-Chr4:23814893 1.14E-72 wgd
Bpe04g01683 Bpe-Chr4:22804541 Bpe04g01866 Bpe-Chr4:23814893 5.19E-88 wgd
Bpe04g00707 Bpe-Chr4:4554977 Bpe04g01866 Bpe-Chr4:23814893 4.33E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00757 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 90.0 1.1e-42 170.2
Bpe14g00737 . 12 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.4 5.3e-37 151.4
Bpe07g00646 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 6.9e-37 151.0
Bpe03g00757 . 1 144 CCAAT-HAP3 Transcription Factor Family AT1G21970 63.3 1.3e-43 173.3
Bpe09g00129 CCT 16 153 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.3 3.2e-37 152.1
Bpe07g00646 . 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.6 1.3e-58 222.6
Bpe14g00737 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.7 1.7e-55 212.2
Bpe09g00129 CCT 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.2 1.6e-53 205.7
Bpe11g00587 CCT 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 66.7 2.9e-50 194.9
Bpe04g01683 BCT,CCT 11 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.2 1.1e-44 176.4
Bpe04g01866 . 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.0e-44 173.3
Bpe15g00441 . 21 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.5 3.4e-43 171.4
Bpe04g00707 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.4e-43 171.0
Bpe04g00696 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.4e-43 171.0
Bpe04g01866 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.2e-50 196.1
Bpe04g00707 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.2e-49 190.7
Bpe04g00696 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.2e-49 190.7
Bpe04g01683 BCT,CCT 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 2.0e-48 188.7
Bpe07g00646 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.1 9.4e-43 169.9
Bpe14g00737 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.6e-42 169.1
Bpe09g00129 CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 3.6e-42 167.9
Bpe11g00587 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.7e-42 167.5
Bpe15g00441 . 9 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.3 8.8e-41 163.3
Bpe11g00587 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.1e-39 157.5
Bpe09g00129 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 2.5e-38 155.2
Bpe07g00646 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.6e-38 154.1
Bpe14g00737 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.6e-38 154.1
Bpe06g00510 . 68 164 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.3 1.6e-37 152.5
Bpe04g01683 BCT,CCT 25 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.8 8.1e-37 150.2
Bpe15g00441 . 22 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 8.1e-37 150.2
Bpe04g01683 BCT,CCT 7 157 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.3 1.4e-58 222.6
Bpe04g01866 . 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.4 1.2e-54 209.5
Bpe04g00696 . 1 139 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 7.8e-54 206.8
Bpe04g00707 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.2 8.4e-48 186.8
Bpe07g00646 . 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.5 1.0e-45 179.9
Bpe11g00587 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.0e-45 179.9
Bpe14g00737 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 5.1e-45 177.6
Bpe09g00129 CCT 17 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.5 1.3e-43 172.9
Bpe15g00441 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.5 9.3e-39 156.8
Bpe15g01076 BCT,CCT 11 155 CCAAT-HAP3 Transcription Factor Family AT2G37060 59.5 2.7e-38 155.2
Bpe07g00646 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 9.8e-46 180.3
Bpe14g00737 . 21 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.4 4.8e-45 177.9
Bpe15g00441 . 3 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.3 1.8e-44 176.0
Bpe11g00587 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.2e-43 173.3
Bpe09g00129 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.3e-42 169.9
Bpe04g01683 BCT,CCT 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.8 4.2e-41 164.9
Bpe04g00696 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.6e-40 162.9
Bpe04g00707 . 24 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.1 3.6e-40 161.8
Bpe04g01866 . 26 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.0 1.4e-39 159.8
Bpe04g01195 . 1 87 CCAAT-HAP3 Transcription Factor Family AT2G13570 86.2 2.6e-38 155.6
Bpe07g00646 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.0 6.8e-51 197.2
Bpe09g00129 CCT 19 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 86.9 5.8e-50 194.1
Bpe14g00737 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.7e-49 192.6
Bpe11g00587 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 4.1e-48 188.0
Bpe04g01683 BCT,CCT 26 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 5.6e-45 177.6
Bpe04g01866 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.9 1.8e-43 172.6
Bpe04g00696 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 8.9e-43 170.2
Bpe04g00707 . 19 114 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.3 5.8e-42 167.5
Bpe15g00441 . 17 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 1.3e-41 166.4
Bpe04g01683 BCT,CCT 12 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.9 2.2e-56 215.3
Bpe04g01866 . 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.5 2.7e-54 208.4
Bpe04g00696 . 16 131 CCAAT-HAP3 Transcription Factor Family AT3G53340 86.7 1.0e-53 206.5
Bpe04g00707 . 16 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 88.1 1.2e-46 183.0
Bpe07g00646 . 6 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.2 1.8e-45 179.1
Bpe14g00737 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 8.8e-45 176.8
Bpe11g00587 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 2.6e-44 175.3
Bpe09g00129 CCT 17 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.3 2.4e-42 168.7
Bpe15g00441 . 22 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.5 5.6e-39 157.5
Bpe15g01076 BCT,CCT 1 155 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.5 7.3e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21387 PF00808 CBFD_NFYB_HMF 4.10E-28 CL0012 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01866 Bpe_Chr04 FPKM 0.568267 1.222499 3.05921 2.67599 3.588557 2.427102 4.086209 1.899904 1.690289 1.907561