Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01866 ATGGCGGAGGCTCCGACGAGTCCAGCCGGTGGGAGTCACGAGAGTGGCGGTGAGAGAAGTCCGGGTACCGTTGTGCGGGAACAAGACCGATATCTTCCGATAGCCAATATTAGCAGGATCATGAAGAAGGCGTTGCCTGCAAACGGAAAAATCGCTAAAGATGCAAAGGACACCGTCCAAGAATGTGTCTCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAAAGAGAAGAGGAAGACGATCAATGGTGACGACTTGTTGTGGGCAATGGCAACTTTAGGATTTGAGGACTATATTGATCCCCTTAAGGTGTATCTAAATAGATACAGAGAGTTTTGGCAGGGGGATGCCAAAGGGTCTGCTAGAGGTGGGGATGACTCTGCTAAACGAGATGCACTTGGTGTCCTTCCTAATCCAAATTCACAGGTTTTGTTTTAA 453 48.79 MAEAPTSPAGGSHESGGERSPGTVVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREFWQGDAKGSARGGDDSAKRDALGVLPNPNSQVLF 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23814893 23816123 + Bpe016573.1 Bpe04g01866 103675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01866 150 Gene3D Histone, subunit A 22 139 IPR009072 GO:0046982
Bpe04g01866 150 MobiDBLite consensus disorder prediction 122 150 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bpe04g01866 150 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bpe04g01866 150 MobiDBLite consensus disorder prediction 1 25 - -
Bpe04g01866 150 SUPERFAMILY Histone-fold 28 136 IPR009072 GO:0046982
Bpe04g01866 150 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bpe04g01866 150 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 148 - -
Bpe04g01866 150 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bpe04g01866 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00696 Bpe-Chr4:4455196 Bpe04g01866 Bpe-Chr4:23814893 2.25E-79 dispersed
Bpe04g01866 Bpe-Chr4:23814893 Bpe14g00737 Bpe-Chr14:5698458 4.36E-58 dispersed
Bpe12g00503 Bpe-Chr12:10867718 Bpe04g01866 Bpe-Chr4:23814893 6.35E-18 dispersed
Bpe15g00553 Bpe-Chr15:16595219 Bpe04g01866 Bpe-Chr4:23814893 1.07E-18 dispersed
Bpe15g01076 Bpe-Chr15:19984528 Bpe04g01866 Bpe-Chr4:23814893 1.14E-72 wgd
Bpe04g01683 Bpe-Chr4:22804541 Bpe04g01866 Bpe-Chr4:23814893 5.19E-88 wgd
Bpe04g00707 Bpe-Chr4:4554977 Bpe04g01866 Bpe-Chr4:23814893 4.33E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21387 PF00808 CBFD_NFYB_HMF 4.10E-28 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01866 K08065 - pop:7469769 255.373