Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01869 ATGGATAAATCTCAAGTAGCTTCGCCCCCAAGAACACCGACTGCTCTTACTTGCACACCCCCTTTTCTATATTCTCCATCTTCTTCCTCTTCCCCTCCGGCCTTTTCCCCGCCCACTTCTCTCTCTTCTCCCCCGAGCAATGCCCGGCCACCTGCCTCTCCTCCGGCCATCGTACTCAGCCCATGTGCCGCTTGCAAAATCCTCCGGCGGAGATGCGTGGACAAGTGTGTTTTAGCTCCGTATTTTCCTCCATCTGAACCTCTCAAGTTCACCACTGCTCACAGAGTCTTTGGAGCTAGCAATATCGATCTTCCTGAGGATCAAAGAGCAGATGCAGTGAGCAGCATGGTGTACGAAGCAAACGCGAGAATCAGAGACCCAGTGTACGGCAGCGCCGGCGCCATTTGCCACCTCCAGAAACAAGTGAGCGAGCTTCAGACCCAGCTGGCCAGAGCTCAGGCCGACCTACTCAACATGCAGCTGCAGCAAAGTAATCTCATTGCAATGTTATGTAAGGAAATTGACCACTCCGTCGACACTACTCCGGCGTCATTTTACAACTCTCATCCGAACTCCGTCGACACTACCTGTTTTCTCGATGATTCTTACTCCTGGGAGCCTCTCTGGACATGA 633 52.76 MDKSQVASPPRTPTALTCTPPFLYSPSSSSSPPAFSPPTSLSSPPSNARPPASPPAIVLSPCAACKILRRRCVDKCVLAPYFPPSEPLKFTTAHRVFGASNIDLPEDQRADAVSSMVYEANARIRDPVYGSAGAICHLQKQVSELQTQLARAQADLLNMQLQQSNLIAMLCKEIDHSVDTTPASFYNSHPNSVDTTCFLDDSYSWEPLWT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23824443 23825556 + Bpe016575.1 Bpe04g01869 103678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01869 210 MobiDBLite consensus disorder prediction 1 30 - -
Bpe04g01869 210 MobiDBLite consensus disorder prediction 1 52 - -
Bpe04g01869 210 Pfam Lateral organ boundaries (LOB) domain 61 153 IPR004883 -
Bpe04g01869 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 209 - -
Bpe04g01869 210 Coils Coil 142 162 - -
Bpe04g01869 210 MobiDBLite consensus disorder prediction 31 52 - -
Bpe04g01869 210 ProSiteProfiles LOB domain profile. 60 156 IPR004883 -
Bpe04g01869 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 51 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01869 Bpe-Chr4:23824443 Bpe15g01174 Bpe-Chr15:20604486 4.21E-46 dispersed
Bpe11g00799 Bpe-Chr11:5972106 Bpe04g01869 Bpe-Chr4:23824443 4.69E-69 wgd
Bpe15g01073 Bpe-Chr15:19963663 Bpe04g01869 Bpe-Chr4:23824443 2.50E-89 wgd
Bpe04g01869 Bpe-Chr4:23824443 Bpe08g01337 Bpe-Chr8:14548087 6.25E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21388 PF03195 LOB 2.60E-34 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01869 - - qsu:111999436 241.121