Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01873 ATGGGAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAAGCTCTGGGTTCTGAATCTACGGAAAAGAAAAATCAGAAAACCCAGAAAACAAAGAGAAAATGGTTTGGAAAGAGTAAGAAAACAGATGTGATTACTTTTTTGGAAGAAACAACTCCACTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAGACGTGAAATTGACAAATGTTGAGAATGAACAAAGCAAGCACGCCTACTCTGTGGCACTTGCCACCGCAGTGGCAGCAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCGGCCGAGGTTGTTCGTCTGACCACTATTCCTCATTTCGTGGGAAAATCAAAGGATGAAATAGCAGCCATCAAAATTCAAACAGCATTTCGTGGATATTTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTACGGTTGAAAATGTTGATGGAAGGGCCATCTGTAAAACGGCAAGTGGCTTCCTCGTTGAGATCCATGCAGACACTTGCACGATTGCAATCGCAGATTCGTATGAGGAGGCTCAGAATGTCGGAGGAGAATCAGGCTCTTCAGCTTCAACTTCAGCAGAAACACGAAAAAGAACTTGTGAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGATAGAACACAGTCAAAAGAACAGGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGCTTTGAGAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGCAAACTTGGAAGAACACTTCGAAATCAGCAAATCAAACGTACATGGATCCGATCAACCCTCACTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCTTCTCGGCCATGGGAGGCAAAAAACATAATTGATTACCAAGATCATACAACTCCAAATCACAGAGCTTCTATTGGAGACGCCAACAAAGCATATACCCGTCGAGATCTCAACCTCGAACTCAAGAATTCCCTATGGACTCCGCCTAGCCAAAAGTCAAGCAGGCCTCCAAGCCGCCAGTCCCCGTTGACTCCTTCAAAGGCACCATCATCTTCGTCTGTGTCAAGGAAAATAAAGCCGTCCAGCCCGAGAGGTAGCAGATGGGGTGGAGACAACGACTCTAAAAGTGTATATAGTGTCACTTCAGACAGGTGCCGGAGACACAGTATTGCAGGGTCATCAGTCAGAGACGACGAAAGTTTAGTCAGCTCGGCTTCAGTTCCGAGCTATATGGGAGCAACAGAGTCCGCAAAGGCAAAGTCTCGATTTTCAAGCCCTGCCGGAGTGGACAAAGCCAGTACGCCGGAGAAGGAATCAGCTGGTTATGTGAAGAAGAGGTTGTCTTTCTCGTCGTCCCCAGCCCCACCGAGGAGGCATTCGGGCCCTCCCGTGATCCCCATGAAGAGAGAAAACTGTGGAAATGAAGAG 1425 47.44 MGKKGSWFCAVTKALGSESTEKKNQKTQKTKRKWFGKSKKTDVITFLEETTPLPLPSPLPALEDVKLTNVENEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTTIPHFVGKSKDEIAAIKIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRQVASSLRSMQTLARLQSQIRMRRLRMSEENQALQLQLQQKHEKELVKLRASIGEEWDDRTQSKEQVEAKILNKQEAALRRERALAYAFSHQQTWKNTSKSANQTYMDPINPHWGWSWLERWMASRPWEAKNIIDYQDHTTPNHRASIGDANKAYTRRDLNLELKNSLWTPPSQKSSRPPSRQSPLTPSKAPSSSSVSRKIKPSSPRGSRWGGDNDSKSVYSVTSDRCRRHSIAGSSVRDDESLVSSASVPSYMGATESAKAKSRFSSPAGVDKASTPEKESAGYVKKRLSFSSSPAPPRRHSGPPVIPMKRENCGNEE 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23845940 23847865 - Bpe025724 Bpe04g01873 103682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01873 475 MobiDBLite consensus disorder prediction 322 383 - -
Bpe04g01873 475 Coils Coil 180 200 - -
Bpe04g01873 475 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bpe04g01873 475 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 464 - -
Bpe04g01873 475 PANTHER IQ-DOMAIN 5-RELATED 1 464 - -
Bpe04g01873 475 MobiDBLite consensus disorder prediction 411 475 - -
Bpe04g01873 475 Gene3D - 30 143 - -
Bpe04g01873 475 SMART iq_5 116 138 IPR000048 GO:0005515
Bpe04g01873 475 MobiDBLite consensus disorder prediction 322 359 - -
Bpe04g01873 475 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01589 Bpe-Chr4:22157407 Bpe04g01873 Bpe-Chr4:23845940 1.14E-131 dispersed
Bpe04g01873 Bpe-Chr4:23845940 Bpe11g00883 Bpe-Chr11:6512334 5.82E-46 dispersed
Bpe04g01873 Bpe-Chr4:23845940 Bpe04g00888 Bpe-Chr4:5949504 4.81E-35 transposed
Bpe04g01873 Bpe-Chr4:23845940 Bpe02g00495 Bpe-Chr2:3201970 1.38E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01873 - - vvi:100256490 513.457