Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01873 ATGGGAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAAGCTCTGGGTTCTGAATCTACGGAAAAGAAAAATCAGAAAACCCAGAAAACAAAGAGAAAATGGTTTGGAAAGAGTAAGAAAACAGATGTGATTACTTTTTTGGAAGAAACAACTCCACTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAGACGTGAAATTGACAAATGTTGAGAATGAACAAAGCAAGCACGCCTACTCTGTGGCACTTGCCACCGCAGTGGCAGCAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCGGCCGAGGTTGTTCGTCTGACCACTATTCCTCATTTCGTGGGAAAATCAAAGGATGAAATAGCAGCCATCAAAATTCAAACAGCATTTCGTGGATATTTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTACGGTTGAAAATGTTGATGGAAGGGCCATCTGTAAAACGGCAAGTGGCTTCCTCGTTGAGATCCATGCAGACACTTGCACGATTGCAATCGCAGATTCGTATGAGGAGGCTCAGAATGTCGGAGGAGAATCAGGCTCTTCAGCTTCAACTTCAGCAGAAACACGAAAAAGAACTTGTGAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGATAGAACACAGTCAAAAGAACAGGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGCTTTGAGAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGCAAACTTGGAAGAACACTTCGAAATCAGCAAATCAAACGTACATGGATCCGATCAACCCTCACTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCTTCTCGGCCATGGGAGGCAAAAAACATAATTGATTACCAAGATCATACAACTCCAAATCACAGAGCTTCTATTGGAGACGCCAACAAAGCATATACCCGTCGAGATCTCAACCTCGAACTCAAGAATTCCCTATGGACTCCGCCTAGCCAAAAGTCAAGCAGGCCTCCAAGCCGCCAGTCCCCGTTGACTCCTTCAAAGGCACCATCATCTTCGTCTGTGTCAAGGAAAATAAAGCCGTCCAGCCCGAGAGGTAGCAGATGGGGTGGAGACAACGACTCTAAAAGTGTATATAGTGTCACTTCAGACAGGTGCCGGAGACACAGTATTGCAGGGTCATCAGTCAGAGACGACGAAAGTTTAGTCAGCTCGGCTTCAGTTCCGAGCTATATGGGAGCAACAGAGTCCGCAAAGGCAAAGTCTCGATTTTCAAGCCCTGCCGGAGTGGACAAAGCCAGTACGCCGGAGAAGGAATCAGCTGGTTATGTGAAGAAGAGGTTGTCTTTCTCGTCGTCCCCAGCCCCACCGAGGAGGCATTCGGGCCCTCCCGTGATCCCCATGAAGAGAGAAAACTGTGGAAATGAAGAG 1425 47.44 MGKKGSWFCAVTKALGSESTEKKNQKTQKTKRKWFGKSKKTDVITFLEETTPLPLPSPLPALEDVKLTNVENEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTTIPHFVGKSKDEIAAIKIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRQVASSLRSMQTLARLQSQIRMRRLRMSEENQALQLQLQQKHEKELVKLRASIGEEWDDRTQSKEQVEAKILNKQEAALRRERALAYAFSHQQTWKNTSKSANQTYMDPINPHWGWSWLERWMASRPWEAKNIIDYQDHTTPNHRASIGDANKAYTRRDLNLELKNSLWTPPSQKSSRPPSRQSPLTPSKAPSSSSVSRKIKPSSPRGSRWGGDNDSKSVYSVTSDRCRRHSIAGSSVRDDESLVSSASVPSYMGATESAKAKSRFSSPAGVDKASTPEKESAGYVKKRLSFSSSPAPPRRHSGPPVIPMKRENCGNEE 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23845940 23847865 - Bpe025724 Bpe04g01873 103682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01873 475 MobiDBLite consensus disorder prediction 322 383 - -
Bpe04g01873 475 Coils Coil 180 200 - -
Bpe04g01873 475 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bpe04g01873 475 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 464 - -
Bpe04g01873 475 PANTHER IQ-DOMAIN 5-RELATED 1 464 - -
Bpe04g01873 475 MobiDBLite consensus disorder prediction 411 475 - -
Bpe04g01873 475 Gene3D - 30 143 - -
Bpe04g01873 475 SMART iq_5 116 138 IPR000048 GO:0005515
Bpe04g01873 475 MobiDBLite consensus disorder prediction 322 359 - -
Bpe04g01873 475 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01873 - - - vvi:100256490 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01589 Bpe-Chr4:22157407 Bpe04g01873 Bpe-Chr4:23845940 1.14E-131 dispersed
Bpe04g01873 Bpe-Chr4:23845940 Bpe11g00883 Bpe-Chr11:6512334 5.82E-46 dispersed
Bpe04g01873 Bpe-Chr4:23845940 Bpe04g00888 Bpe-Chr4:5949504 4.81E-35 transposed
Bpe04g01873 Bpe-Chr4:23845940 Bpe02g00495 Bpe-Chr2:3201970 1.38E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01873 Bpe_Chr04 FPKM 1.356401 0.810317 1.003805 1.161846 3.996265 4.140186 3.643524 3.629309 3.595342 3.859297