Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01887 CCCCAAAGAAAATACATGGAGTATCCGAGCTGCAACAATGGGGGAGAAGAACCCATGAGCCTCTGCAAAGTAGCGGACCCTTTGAACTGGGGGGCTGCAGCGGAGGGGCTGAGGGGGAGCCACCTGGAGGAGGTGAAGCGGATGGTGGAGGAATATCGGAAGGCGGAGGTTCGGCTGGGCGGCGAGACGCTGACGATAGGTCAAGTGGCAGCCATTGCCGCCACTGAGGGGGCGGTGAAAGTGGAGCTTTCGGAGGAGACGAGGGGGCGAGTGAAGGCTAGCAATGAATGGGTGCTTGAGAGCATGAACAAGGGGACTGATAGCTATGGCGTCACAACTGGCTTTGGTGCAACCTCCCACAGACGGACCAAGCAGGGTGGTGCTCTTCAAAAGGAGCTTATCAGGTTTTTGAACGCTGGAATTTTTGGAAATGGAAGAGAAAATAGACAAACGCTGCCTCACACAGTGAGCAGAGCAGCAATGTTGGTGAGAATCAACACCCTTCTACAGGGCTACTCAGGCATCAGATTTGAGATTCTCGAAGCCATTACTAACCTCCTTAACCACAACATTACTCCTTGTCTACCTCTCCGAGGCACCATTACTGCTTCTGGAGATTTAGTTCCTCTCTCCTACATTGCAGGGCTGTTGACGGGAAGGCCAAACTCAAAAGCCGTTGGACCAAAAGGGGAGTCTCTCAATGCTTCTGAGGCCTTTCAGCTGGCTGAGATAAGTGGAGGCTTTTTCGAGCTGCAGCCGAAAGAGGGTCTTGCTCTTGTCAACGGCACGGCAGTTGGGTCTGGTTTAGCTTCCACTGTTCTTTTCGAGACCAACATTTTGACGATTCTTGCCGTGGTTTTGTCAGCCATTTTCGCAGAAGTTATGCAAGGAAAGCCGGAATTTACCGATCATTTGACGCATAAGTTGAAGCATCATCCCGGCCAAATCGAAGCTGCAGCCATAATGGAGCACATTTTAGATGGAAGCTCTTATGTTAAATCAGCTCAGAAAGTCCATGAAATTGATCCCCTCCAAAAGCCAAAGCAAGATAGATATGCTCTAAGAACGTCTCCCCAATGGCTCGGACCTCTAATCGAAGTTATCCGAATGGCCACCAAGATGATAGAAAGGGAAATCAACTCCGTCAATGATAACCCGTTGATCGACGTTGCGAGAAACAAGGCTTTGCACGGGGGGAATTTCCAAGGGACCCCAATTGGCGTCTCGATGGATAATACTCGCCTAGCTATCGCTTCGATTGGAAAGCTTTTGTTTGCTCAATTTTCCGAGCTGGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCGGCCGGTCGTAATCCGAGCTTGGATTACGGATTCAAAGGTGCTGAAATAGCCATGGCGTCTTACTGCTCAGAGCTTCAATTCTTGGCCAATCCAGTCACAAACCATGTGCAAAGCGCAGAGCAACACAACCAAGACGTGAACTCTCTGGGCTTAATTTCTGCAAGAAAAACAGCCGAAGCAGTAGAAATATTAAAGCTCATGTCGTCAACTTTCTTAGTGGCATTGTGTCAAGCAGTTGATCTGCGCCACTTAGAGGAAAACCTGAAGAATGCAGTGAAGAACACAGTCAGCCAAGTATCAAAGAAGGTCTTAATAATGGGTTTTAGCGGAGAACTCCACCCAATCAGATTCTGCGAAAAAGACTTACTCAAAGTCGTAGAAAGAGAACATGTGTATTCCTACATTGACGACCCTTGCAGCGCTACATACCCATTAATCCAAAAACTCAGACAAGTTTTGGTAGACCAAGCTCTCAGCAATGGCGACAGAGAGAGAAATTCAAGCACGTCCATTTTCCAGAAAATCGGAGCTTTTGAGGAAGAGCTGAGGACCCTCTTGCCTAAAGAAGTGGAAAACGCGAGGAAAGAGTACGAAAATGGAAACCCGGCGATACAAAACCAGATCAAGGAGTGCAGATCGTACCCATTGTACAAGTTCGTGAGAGAAACATTGGGGACGGAGCTTCTAACCGGAGAGGAAGTTAGATCGCCCGGAGAAGAATTCGACAAAGTTTTCTCGGCAATTTGTGATGGGAAACTGATCGATCCATTGCTAGAGTGTTTGAAAGAGTGGAACGGTGCTCCTCTTCCTATATGTTAG 2154 48.33 PQRKYMEYPSCNNGGEEPMSLCKVADPLNWGAAAEGLRGSHLEEVKRMVEEYRKAEVRLGGETLTIGQVAAIAATEGAVKVELSEETRGRVKASNEWVLESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRENRQTLPHTVSRAAMLVRINTLLQGYSGIRFEILEAITNLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPKGESLNASEAFQLAEISGGFFELQPKEGLALVNGTAVGSGLASTVLFETNILTILAVVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKVHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRMATKMIEREINSVNDNPLIDVARNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTFLVALCQAVDLRHLEENLKNAVKNTVSQVSKKVLIMGFSGELHPIRFCEKDLLKVVEREHVYSYIDDPCSATYPLIQKLRQVLVDQALSNGDRERNSSTSIFQKIGAFEEELRTLLPKEVENARKEYENGNPAIQNQIKECRSYPLYKFVRETLGTELLTGEEVRSPGEEFDKVFSAICDGKLIDPLLECLKEWNGAPLPIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23918844 23921702 + Bpe016590.1 Bpe04g01887 103696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01887 717 CDD PAL-HAL 62 527 IPR001106 -
Bpe04g01887 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Bpe04g01887 717 Gene3D - 19 263 IPR024083 -
Bpe04g01887 717 PANTHER HISTIDINE AMMONIA-LYASE 22 717 IPR001106 -
Bpe04g01887 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Bpe04g01887 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 717 - -
Bpe04g01887 717 Pfam Aromatic amino acid lyase 64 542 IPR001106 -
Bpe04g01887 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bpe04g01887 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Bpe04g01887 717 Gene3D - 530 651 IPR023144 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01887 Bpe15g01056 CCT
Bpe04g01887 Bpe15g01056 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00697 Bpe-Chr4:4465678 Bpe04g01887 Bpe-Chr4:23918844 0 dispersed
Bpe15g01056 Bpe-Chr15:19846154 Bpe04g01887 Bpe-Chr4:23918844 0 wgd
Bpe04g00695 Bpe-Chr4:4449075 Bpe04g01887 Bpe-Chr4:23918844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01887 K10775 - pop:7479878 1204.89