Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01900 TTTTCTACTCGCTGCATTCTCTTGATATGCCTTTTGAGCTTCATTTTTCCCATTTCTATGGCGGCCCTGAATCTCACCCTCCCTCACCAGCACCCATACCCTGATGCTGTTTCTGAAGAAGTTCATAGGATAGTAAATGATTCTCTAACCAGAAGAGAAATGCTGAATCTCCAATCTAAGAACCAAGTTAACCAATCCTGTCTCACCGGGAACCCAATCGATGACTGCTGGCGGTGCGACCAAAACTGGCGAACAAACCGGCAAAGGCTCGCCGATTGCGGCATTGGGTTCGGCCAAGACGCCATGGGAGGAAAAGGCGGCCAGATCTACACGGTCACCGACTCTTCAGATTCAAATCCAGCAAACCCCACTCCGGGAACTCTACGTCACGCTGTCGTCCAAGACGAACCCCTCTGGATCATCTTCTCCGCCGACATGACCATCAACTTAAAACACGAGCTCATCTTCAACAGTTTCAAAACCGTCGATGGTCGCGGCGGCAACGTTCACATCACCGGCGGCGGGTGCATCACCCTTCAGTATGTCTCAAACGTAATAATCCACAACATCAACATTCACCATTGTAGGCCAACTGGAAATACCAACATACGGTCGAGTCCAACCCAAACCCAGTACCGTAGCATATCAGACGGCGACGGCATCTCCATCTTCGGCTCGCGCAAAATCTGGATCGACCATTGCACACTCTCCTACTGCAAAGACGGTCTGATCGACGCAATAATGGGGTCCACCGGAATAACAATATCGAACAACTACTTCTCGCATCATGATGAGGTGATGCTGTTGGGCCACGACGACAAGTATGAACCAGATTCTGGGATGCAGGTGACCATAGCTTTCAATCACTTCGGTGTAGCGCTGGTACAACGTATGCCTCGGTGTAGACGAGGGTACATACACGTTGTGAACAATGATTTCACGGAGTGGGAGATGTATGCCATCGGCGGTAGTGCCAACCCTACCATAAACAGTCAGGGAAATAGATACACTGCTCCGGCGGACACTAATGCCAAAGAGGTGACGAGGCGTTTGGACACCGGCGATGTGGAGTGGACGAAGTGGAACTGGAGGACGGTGGGTGACGTAATGGCGAACGGAGCATTCTTCGTTCCCTCCGGTGATGGTCTGAGCAGTCTCTACTCTAAAGCTTACAGTGTCGACCCCAAATCAGCTGGTTTGATTGACCAGATAACCATCAACGCCGGTGCGTTTGGTGGGCCCAGG 1245 51.24 FSTRCILLICLLSFIFPISMAALNLTLPHQHPYPDAVSEEVHRIVNDSLTRREMLNLQSKNQVNQSCLTGNPIDDCWRCDQNWRTNRQRLADCGIGFGQDAMGGKGGQIYTVTDSSDSNPANPTPGTLRHAVVQDEPLWIIFSADMTINLKHELIFNSFKTVDGRGGNVHITGGGCITLQYVSNVIIHNINIHHCRPTGNTNIRSSPTQTQYRSISDGDGISIFGSRKIWIDHCTLSYCKDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYEPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSANPTINSQGNRYTAPADTNAKEVTRRLDTGDVEWTKWNWRTVGDVMANGAFFVPSGDGLSSLYSKAYSVDPKSAGLIDQITINAGAFGGPR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23991902 23993583 - Bpe025727 Bpe04g01900 103709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bpe04g01900 415 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bpe04g01900 415 Gene3D - 70 412 IPR012334 -
Bpe04g01900 415 PANTHER PECTATE LYASE 18-RELATED 8 414 IPR045032 GO:0030570
Bpe04g01900 415 SUPERFAMILY Pectin lyase-like 62 398 IPR011050 -
Bpe04g01900 415 SMART amb_all 145 342 IPR002022 -
Bpe04g01900 415 Pfam Pectate lyase 153 334 IPR002022 -
Bpe04g01900 415 PANTHER PECTATE LYASE 8 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01900 Bpe-Chr4:23991902 Bpe09g00408 Bpe-Chr9:6572920 8.80E-176 dispersed
Bpe15g01343 Bpe-Chr15:21538423 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
Bpe15g01045 Bpe-Chr15:19798888 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
Bpe04g00676 Bpe-Chr4:4287461 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01900 K01728 - zju:107413230 665.225