Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01942 ATGAGAAGGTCGCCGTCCTCCTCCTGCTCCTCCTCCACCTCCTCCGGCGTCGGCTCTGAAACCACCGCTCACCGATCTCAGAATTTACCCAAACCCAAAAGAGCAAGAAAAATCCAATCAGACGCAGACAAACCCCAGAAAAATGCCGACGCTAATACCACCAATGGCTCCTCCAGGAGAAGCTCCATTTACAGAGGGGTCACCAGGCCAGTCTCTCTCTCTCTCTCTCTCCTCTCCCTCTCTTTCTCTCAGACGCACAGATGGACTGGGAGATTTGAAGCTCACCTCTGGGATAAAAGTTCTTGGAACAACATTCAGAACAAGAAAGGACGACAAGGGGCATACGACAATGAGGTGGCAGCAGCGCGTACCTACGATCTTGCTGCTCTCAAGTACTGGGGCCCACACACAACCTTAAATTTCCCGGCAGAGACGTACGAAAAGGAAGTGGCGGAAATGGAGAAGGTTACCAAAGAAGAGTACTTGGCTACGCTGAGGAGGCAGAGCAGCGGCTTCTCTAGAGGTGTCTCTAAATACAGAGGAGTTGCCAGGCATCATCATAATGGAAGGTGGGAGGCCAGAATTGGAAGAGTTTTAGGCAGCAAATATCTCTACTTAGGAACTTACAACACCCAGGAGGAAGCGGCGGCGGCTTATGATATGGCGGCTATAGAGTACAGAGGAGCGAATGCCGTGACGAATTTCGACATCAGCCGCTACATCGACCGCCTGAGCGTCAAAATCTTTCCTCCGGCGAAGACCCAAAAGCGAGAAGAGGAAGAGGAAGAGGGTGAAGTAGAACAGCAAGTGAAACAGCTGGAAGAGAAGAGCCGTGAGACCAAGTTGTCGGAGGAGCAGAACTCTGCGATGGCGTTGGGGATGGATCCGGTGGAGGACGAAGACCTAGGAAGCCTAGAATGGTGCTTCTTAGATTCGGGTTTCAGTTTGTTTCCTGTTCCTGATCTGCCATTAGAGAACCCTAGCGCCCTACCCGACTTGTTCGGCGACGTAGGGTTTGAGGAGAACATCGACTTGATATTCGACGTAGGCTACGGCGGGAGCGACTGTTGTGGAGAAGAAGTGGGTGGGTCGGGGAGAGCGGAGGAGAGCTGCGGGGAAGAGAAGAGGAGGTTGCCAGCCTCGCCGTCTCCTTCATCTTCTACGATCACTTCGGTGGGTGGCTTCTTATGA 1191 52.73 MRRSPSSSCSSSTSSGVGSETTAHRSQNLPKPKRARKIQSDADKPQKNADANTTNGSSRRSSIYRGVTRPVSLSLSLLSLSFSQTHRWTGRFEAHLWDKSSWNNIQNKKGRQGAYDNEVAAARTYDLAALKYWGPHTTLNFPAETYEKEVAEMEKVTKEEYLATLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISRYIDRLSVKIFPPAKTQKREEEEEEGEVEQQVKQLEEKSRETKLSEEQNSAMALGMDPVEDEDLGSLEWCFLDSGFSLFPVPDLPLENPSALPDLFGDVGFEENIDLIFDVGYGGSDCCGEEVGGSGRAEESCGEEKRRLPASPSPSSSTITSVGGFL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24297951 24300764 + Bpe016644.1 Bpe04g01942 103751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01942 396 Gene3D AP2/ERF domain 64 144 IPR036955 GO:0003700|GO:0006355
Bpe04g01942 396 Gene3D AP2/ERF domain 177 238 IPR036955 GO:0003700|GO:0006355
Bpe04g01942 396 SMART rav1_2 63 148 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 SMART rav1_2 178 242 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 MobiDBLite consensus disorder prediction 359 396 - -
Bpe04g01942 396 Coils Coil 252 286 - -
Bpe04g01942 396 ProSiteProfiles AP2/ERF domain profile. 178 236 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 CDD AP2 62 143 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g01942 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 293 - -
Bpe04g01942 396 Pfam AP2 domain 177 228 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 MobiDBLite consensus disorder prediction 380 396 - -
Bpe04g01942 396 MobiDBLite consensus disorder prediction 45 63 - -
Bpe04g01942 396 CDD AP2 177 238 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 293 - -
Bpe04g01942 396 MobiDBLite consensus disorder prediction 1 63 - -
Bpe04g01942 396 ProSiteProfiles AP2/ERF domain profile. 63 142 IPR001471 GO:0003700|GO:0006355
Bpe04g01942 396 MobiDBLite consensus disorder prediction 253 287 - -
Bpe04g01942 396 SUPERFAMILY DNA-binding domain 86 143 IPR016177 GO:0003677
Bpe04g01942 396 MobiDBLite consensus disorder prediction 269 283 - -
Bpe04g01942 396 SUPERFAMILY DNA-binding domain 177 238 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01942 Bpe-Chr4:24297951 Bpe13g00463 Bpe-Chr13:12161863 4.73E-86 dispersed
Bpe04g01942 Bpe-Chr4:24297951 Bpe14g00190 Bpe-Chr14:2219259 1.37E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21393 PF00847 AP2 2.00E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01942 - - rcu:8283400 390.578