Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01955 ATGGATAGGATGGAAGATATGAAATTTTCAACCTCACAGTCCAAGAATTCTCATACAGATGGGGAAGGGGGAGATAATATTGAAGCTCGATTCTCAGATTTTTGCAAGAACGGGCTCTTTATTGATGACAACTCTCATGCTCAAGCTTTGAAGCTGTTCGGGGAAACTAAACACTTTCTTTTGACAAATATGACAGCTATAGGGAGTGGAGCACTTGAAGAAGCAGAGCGGTATTGGTTTGCATTTATTTTATACTCTGTAAAAAGGTTGAGCAAAAATAATGAAGATAGTCCACAACAGGGATCTGATGACTGTGGGCTGAACTTATGCCACGTTTTAAGGAAAGCAAAGCTAAACATTGTTGATTTTTTCAAAGAGTTGCCTCAATTTGTTGGAAAGGCAGGTCCTATTTTAAGTAGAATGTATGGTTCAGATTGGGAAACTAGACTAGAGGCAAAGGAGTTGCAAACTAATTTTGTGCATCTGAGTATTTTAAGCAAGTACTATAAACGTGTATACCAGGAATTCTTCACTATTAATGCCAATGCCAATAAGCAGCCAACTACTCTCAGTTCCCAAGATAATGTTTTAGACTACCAACAATTTGGATGGTTGCTATTTTTGGCACTCCGAGTACACACATTTAGCCGTTTTAAAGACTTAGTGACTTGCACCAATGGCCTACTTTCTATTTTGGCTATCTTGATAATTCACATTCCTGTCCACTTCAGAAACTTCAACATACTTGAATCTCAACGTTTTGTTAAGAAAGGCGATGGTAGAATAGACCTGATTGGATCACTTTGCAAGCTTTATGAAACCTCAGAAGAAGAATTGAAGGAAACAATAGAAAAGGCTAATAATCTGATTGAAGACATTTTGAAGAAGAAATCATGTCCCGCTTCCGAATGTTCTAGTGAATGTCTGAAGAATTTTGATACAGATGGTTTGACGCACTTTGAAGATCTGATGGAGGCATCATCTTTATCATCGAGTTTAGATATTTTAGAGAACGATTATGAAAATGCATTTCGGAATAAGGGTGAATTTGATGAGAGAGTATTCATCTATGAAGAAGACAGCTTACTTGGTTCAGGAAGTTTGTCTGCGGGCGCCACTAATATAATTGGTGTCAAGAGAAATTTTGATTTAATGGCATCGCCTGCTAGGACAATAACAAGCCCTCTGTCTCCTCTTCGTTCCCCTGCTTCTCATGCCAATGGTATTCACGGAGTTGCTAGCTCTAAGATGGCAGCAACACCTGTAAGCACGGCAATGACAACAGCAAAGTGGCTACGTACTGTTATTTCTCCACTTCCAGCTAAAGCCTCGGCTGAGTTAGAGCACTTTCTGGCTTCTTGTGATAGAGATGTAACTAATGACGTAGTTCGTAGGGCACTTATTATATTAGAGGCCATATTTCCTACTAGTTCTCGTGGAGATCATTGTAGAGCTGGTAACTTACATAGTGCAAACCTCATGGACAACATTTGGGCTGAGCAACGAAGACTAGAAGCACTGAAGTTATATTACCGAGTTTTGGAAGCAATGTGCAGAGCAGAGGCTCAAATATTGCATGCGAATAATTTGACCTCTCTACTAACCAATGAGAGGTTCCATAGGTGTATGTTGGCCTGTTCTGCCGAACTTGTTCTGGCGACACACAAAACTGTTACGATGTTGTTTCCTGCAGTGTTGGAAAGGACTGGGATTACAGCCTTTGATCTTAGCAAGGTGATAGAGAGTTTCATAAGACATGAAGAATCTCTTCCAAGAGAATTGAGGCGACACTTGAATTCATTGGAAGAACGACTGTTGGAGAGTATGGTGTGGGAAAAGGGTTCATCAATGTATAATTCTTTGATAGTTGCAAAACCAGGTCTTACGACAGAAATAAACCGTCTAGGGTTTTTAGCAGAACCGATGCCATCTTTGGATGCTATTGCATTGCTCATAAACTTTTCTGGAGTTGGGTTGCCCCCTGTGCTTAATTTACAAAAGCATGAGATCGTCCTAGGTCAGAATGGAGATATTAAGTCTCCAAAAAGATTGCGCCCAGATTATCGAAGTGTGTTAGTGGAGCGAAATTCCTTTACATCTCCAGTGAAGGAGCGGCTAATGGGCTTTAATAACATTAAATCAAAGTTACTGCTACCTCCTTTACAGTCCGCCTTTGCGAGTCCTACACGTCCTAATCCTGGAGGTGGAGGGGAAACATGTGCCGAAACTGGAATTAACATATTCTTTAGCAAAATTCTTAAGCTGGCTGCGGTTAGAATCAGTGGTATGGTTGAAAGGCTGAAACTTTCTCAGCAGATACGGGAGGATGTCTACAACCTTTTTCAACAAATCCTAAATCAGAAGACTTCACTTCTTTTCAATCGTCACATTGACCAGATCATCCTTTGCTGTTTCTATGGCATCGCAAAGATTTCTCCAACAGATTTGACATTTAGAGAAATCATTGAAAAATATAAGAAGCAACCACATTGCAAAATACAAGTTTTTCGCAGTGTTTTTGTTGATTGGTCGCCTGCCCGCCGTAACGGAAGAACTGGTCAGGATCATGTTGATATAATCACATTCTACAATGAAATGTTCATCCCTGTTGTGAAACCTCTGCTGGTCAACTTTGGCCCTGCTGGTCCTACTACAAAAACAAATAGAGTTCCTGAGGGTTCCAGCAATAATGATGCACCATGTCCTGGATCGCCGAAAAGATCTCCTTTCCCAAGTCTTCCTGATATGTCTCCCAAAAAAGTTTCTGCTGCACATAATGTCTACGTCTCTCCGTTAAGATCATCAAAGATGGATGCCTTAATTTCACACAGCTCCAAAAGCTATTATGCTTGTGTTGGAGAGAGCACTCATGCATATCAAAGCCCTTCAAAAGACTTGTCTGCCATAAACAACCGCTTAAATGGGATTCGGAAGCTCCGTGGAACGCTCAATTTTGACGATGTAGATGTTGGTTTGGTGAGTGATTCAATGGTTGCCAACAGCCTTTACCTTCAAAACGGGAGTTGTGCATCTTCGTCGGGCACGCCAATTAAATCAGAACAACCTGACTCCTGA 3075 40.81 MDRMEDMKFSTSQSKNSHTDGEGGDNIEARFSDFCKNGLFIDDNSHAQALKLFGETKHFLLTNMTAIGSGALEEAERYWFAFILYSVKRLSKNNEDSPQQGSDDCGLNLCHVLRKAKLNIVDFFKELPQFVGKAGPILSRMYGSDWETRLEAKELQTNFVHLSILSKYYKRVYQEFFTINANANKQPTTLSSQDNVLDYQQFGWLLFLALRVHTFSRFKDLVTCTNGLLSILAILIIHIPVHFRNFNILESQRFVKKGDGRIDLIGSLCKLYETSEEELKETIEKANNLIEDILKKKSCPASECSSECLKNFDTDGLTHFEDLMEASSLSSSLDILENDYENAFRNKGEFDERVFIYEEDSLLGSGSLSAGATNIIGVKRNFDLMASPARTITSPLSPLRSPASHANGIHGVASSKMAATPVSTAMTTAKWLRTVISPLPAKASAELEHFLASCDRDVTNDVVRRALIILEAIFPTSSRGDHCRAGNLHSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPGLTTEINRLGFLAEPMPSLDAIALLINFSGVGLPPVLNLQKHEIVLGQNGDIKSPKRLRPDYRSVLVERNSFTSPVKERLMGFNNIKSKLLLPPLQSAFASPTRPNPGGGGETCAETGINIFFSKILKLAAVRISGMVERLKLSQQIREDVYNLFQQILNQKTSLLFNRHIDQIILCCFYGIAKISPTDLTFREIIEKYKKQPHCKIQVFRSVFVDWSPARRNGRTGQDHVDIITFYNEMFIPVVKPLLVNFGPAGPTTKTNRVPEGSSNNDAPCPGSPKRSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLSAINNRLNGIRKLRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGTPIKSEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24404793 24411400 + Bpe016657.1 Bpe04g01955 103764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01955 1024 PANTHER BNACNNG22930D PROTEIN 24 1011 - -
Bpe04g01955 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Bpe04g01955 1024 Coils Coil 269 296 - -
Bpe04g01955 1024 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
Bpe04g01955 1024 Gene3D - 423 611 - -
Bpe04g01955 1024 SMART DUF3452_2 90 238 IPR024599 -
Bpe04g01955 1024 MobiDBLite consensus disorder prediction 885 902 - -
Bpe04g01955 1024 Gene3D - 199 356 - -
Bpe04g01955 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 24 1011 IPR028309 GO:0006357|GO:0051726
Bpe04g01955 1024 MobiDBLite consensus disorder prediction 1 24 - -
Bpe04g01955 1024 Gene3D - 709 899 - -
Bpe04g01955 1024 Pfam Domain of unknown function (DUF3452) 102 238 IPR024599 -
Bpe04g01955 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634|GO:0051726
Bpe04g01955 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634|GO:0051726
Bpe04g01955 1024 MobiDBLite consensus disorder prediction 885 916 - -
Bpe04g01955 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634|GO:0051726
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21394 PF01858 RB_A 1.20E-63 CL0065 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01955 K04681 - csv:101219810 1536.16